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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060222 ID=TCONS_00060222|Name=TCONS_00060222|organism=Clytia hemisphaerica|type=transcript|length=739bp
TCGTGACCCGCTGTTCTTTCGTTGGACAAAGTTTCTTATAGATCGTTTCC
ATTGGAAGAACCACACTGCTTGTGGAATTGGTTACTGCATGAATATATAT
TCCGAGCTTGAGAAAATGAATAGCCAAATTAACGAGCAGCAAAATGCAGC
AACCAAACGTTTGAAGACCCAGTTATCATATATGCGCCCCGATCACTTCA
TGTCTCATTGTCGATTCTTNACAGCAAAATGCAGCAACCAAGCGTTTGAA
GACCCAGTTATCATATATGCGCCCCGATCACTTCATGTCTCATTGTCGAT
TCTTTATTTGGTAtcgaaattatttaaaacagtCTGCACTTTGAACCTAT
ATTTGAGGAATGTTTGTAAATAATTTATTACaaaaaatctatcaaaataT
AATTGGAAGTGTGGTGAACTACCTTTGACAAGAAGTACCTTTTGATTTCA
ACACGCAAATTTTACACATAACATAACCGCAAAATTGATAGAAATAttat
actcttaggtgcctaATAACCCCtccacttttttgattttttttcttcct
aaatTTTCCTACCTCTTCGTTTATTGGGCACCTGAGAATACTCCTTCTCA
CAGGCAGTGTTAGATGAAAGAATGTCACTTTGAGAATAGAAAAAACAATC
CGTTTTCTGAAAACtgagaaaaagtttgtttttattttattttttaattt
atccaAGGTTTTACTGAAATTATTCTTAGCAAGCTCTTT Run BLAST on NCBI protein sequence of TCONS_00060222-protein >TCONS_00060222-protein ID=TCONS_00060222-protein|Name=TCONS_00060222-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
RDPLFFRWTKFLIDRFHWKNHTACGIGYCMNIYSELEKMNSQINEQQNAA
TKRLKTQLSYMRPDHFMSHCRFXTAKCSNQAFEDPVIIYAPRSLHVSLSI
LYLVSKLFKTVCTLNLYLRNVCK Run BLAST on NCBI transcript from alignment at scaffold_338:1..1335+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060222 ID=TCONS_00060222|Name=TCONS_00060222|organism=Clytia hemisphaerica|type=transcript|length=1335bp|location=Sequence derived from alignment at scaffold_338:1..1335+ (Clytia hemisphaerica)
TCGTGACCCGCTGTTCTTTCGTTGGACAAAGTTTCTTATAGATCGTTTCC
ATTGGAAGAACCACACTGGTAAGCAATCTTAGTAGATGGATTTCCCAAGA
AATTTGAGTTATGTAACGAGATAGGATTTGTAAATTTACTTATTTTTAGT
GTCAGCTATTGAAGAAAATACCtagaatttcttcattttcgagTCAATTT
CTAATAAGCGCTCCCGTGCACGGCTTATatcgaaattgtatttttagata
tattccatataacgttacatgaacgttgaaacaacgttgtgtgccagctg
ggaaggtcCATGCNTGGGGAGGTGCAGGGCTTATatcgaaattgtatttt
tagatatattccatataacgttacatgaacgttgaaacaacgttgtgtgc
cagctggaaaggtccatgccacacttattccttaattactcatgatctaa
ttacttaaattcgttttttcaaaagcagtttgttcttaaacatgtcaaag
aagcgaaaacataaagttttatcttcaaattctgaaattgatttttaact
GTGACCAGAGACCTTAAAAGAAAGCGGCGCTTAATGGAGGAAATACGAta
tcaaatgttttttctttttttataacgGACCTCTTTCACTTATGGTCTAT
TTTTCTATATTTAGCTTGTGGAATTGGTTACTGCATGAATATATATTCCG
AGCTTGAGAAAATGAATAGCCAAATTAACGAGCAGCAAAATGCAGCAACC
AAACGTTTGAAGACCCAGTTATCATATATGCGCCCCGATCACTTCATGTC
TCATTGTCGATTCTTNACAGCAAAATGCAGCAACCAAGCGTTTGAAGACC
CAGTTATCATATATGCGCCCCGATCACTTCATGTCTCATTGTCGATTCTT
TATTTGGTAtcgaaattatttaaaacagtCTGCACTTTGAACCTATATTT
GAGGAATGTTTGTAAATAATTTATTACaaaaaatctatcaaaataTAATT
GGAAGTGTGGTGAACTACCTTTGACAAGAAGTACCTTTTGATTTCAACAC
GCAAATTTTACACATAACATAACCGCAAAATTGATAGAAATAttatactc
ttaggtgcctaATAACCCCtccacttttttgattttttttcttcctaaat
TTTCCTACCTCTTCGTTTATTGGGCACCTGAGAATACTCCTTCTCACAGG
CAGTGTTAGATGAAAGAATGTCACTTTGAGAATAGAAAAAACAATCCGTT
TTCTGAAAACtgagaaaaagtttgtttttattttattttttaatttatcc
aAGGTTTTACTGAAATTATTCTTAGCAAGCTCTTT Coding sequence (CDS) from alignment at scaffold_338:1..1335+ >TCONS_00060222 ID=TCONS_00060222|Name=TCONS_00060222|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at scaffold_338:1..1335+ (Clytia hemisphaerica)
CGTGACCCGCTGTTCTTTCGTTGGACAAAGTTTCTTATAGATCGTTTCCA
TTGGAAGAACCACACTGCTTGTGGAATTGGTTACTGCATGAATATATATT
CCGAGCTTGAGAAAATGAATAGCCAAATTAACGAGCAGCAAAATGCAGCA
ACCAAACGTTTGAAGACCCAGTTATCATATATGCGCCCCGATCACTTCAT
GTCTCATTGTCGATTCTTNACAGCAAAATGCAGCAACCAAGCGTTTGAAG
ACCCAGTTATCATATATGCGCCCCGATCACTTCATGTCTCATTGTCGATT
CTTTATTTGGTAtcgaaattatttaaaacagtCTGCACTTTGAACCTATA
TTTGAGGAATGTTTGTAAATAACGTGACCCGCTGTTCTTTCGTTGGACAA
AGTTTCTTATAGATCGTTTCCATTGGAAGAACCACACTGCTTGTGGAATT
GGTTACTGCATGAATATATATTCCGAGCTTGAGAAAATGAATAGCCAAAT
TAACGAGCAGCAAAATGCAGCAACCAAACGTTTGAAGACCCAGTTATCAT
ATATGCGCCCCGATCACTTCATGTCTCATTGTCGATTCTTNACAGCAAAA
TGCAGCAACCAAGCGTTTGAAGACCCAGTTATCATATATGCGCCCCGATC
ACTTCATGTCTCATTGTCGATTCTTTATTTGGTAtcgaaattatttaaaa
cagtCTGCACTTTGAACCTATATTTGAGGAATGTTTGTAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060222-exon-scaffold_338-1491911889:1..68 | TCONS_00060222-exon-scaffold_338-1491911889:1..68 | Clytia hemisphaerica | exon |
| TCONS_00060222-exon-scaffold_338-1510915933:1..68 | TCONS_00060222-exon-scaffold_338-1510915933:1..68 | Clytia hemisphaerica | exon |
| TCONS_00060222-exon-scaffold_338-1575043694:1..68 | TCONS_00060222-exon-scaffold_338-1575043694:1..68 | Clytia hemisphaerica | exon |
| TCONS_00060222-exon-scaffold_338-1491911889:665..1335 | TCONS_00060222-exon-scaffold_338-1491911889:665..1335 | Clytia hemisphaerica | exon |
| TCONS_00060222-exon-scaffold_338-1510915933:665..1335 | TCONS_00060222-exon-scaffold_338-1510915933:665..1335 | Clytia hemisphaerica | exon |
| TCONS_00060222-exon-scaffold_338-1575043694:665..1335 | TCONS_00060222-exon-scaffold_338-1575043694:665..1335 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_338 | supercontig | scaffold_338:1..1335 + |
Blast
The following BLAST results are available for this feature:
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