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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058821 ID=TCONS_00058821|Name=TCONS_00058821|organism=Clytia hemisphaerica|type=transcript|length=9245bp protein sequence of TCONS_00058821-protein >TCONS_00058821-protein ID=TCONS_00058821-protein|Name=TCONS_00058821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2389bp MKMVGQQRKMKSITMRNLCSMSXWAAAQDEVDYNAKLVFDESDESDDDRSRun BLAST on NCBI transcript from alignment at scaffold_314:201312..231690+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058821 ID=TCONS_00058821|Name=TCONS_00058821|organism=Clytia hemisphaerica|type=transcript|length=30379bp|location=Sequence derived from alignment at scaffold_314:201312..231690+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_314:201312..231690+ >TCONS_00058821 ID=TCONS_00058821|Name=TCONS_00058821|organism=Clytia hemisphaerica|type=CDS|length=50190bp|location=Sequence derived from alignment at scaffold_314:201312..231690+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00058821 vs. Swiss-Prot (Human)
Match: PRC2A (Protein PRRC2A OS=Homo sapiens GN=PRRC2A PE=1 SV=3) HSP 1 Score: 93.9745 bits (232), Expect = 1.445e-18 Identity = 107/351 (30.48%), Postives = 153/351 (43.59%), Query Frame = 2
Query: 338 KGKDTGKKYASFNINPSFQRSKGDGKTGQGNRGHGMQSLGKVQ-SRRVLKPVNLASLKSENLGNDPLVNLVPTGSQGWGKKETTQTSNQERSTSGSNQPPHGAKIDSSEKQEKQEVVLRPNAGVEPGKTSDQMPKKW----------GSKANSQSSDSPYFQREFPTLGQEGNKREASGE---GDQNVNP-QGMAPQQS----DGSKPGENATNMPNHPNFNGNQFPYPYAFMPGPGGARMPIHPYYFPYPGSGGKMPPF---------------------DPNFMQRMP---------PPFNQNKGKMERPSTIKDTDLRNLDKEKDEN--GWAAAQDEVDYNAKLVFDE 1237
KGKD GKKY+S N+ +++ + + HG+QSLGKV +RR+ P NL SLK+EN GNDP V+LVP GW K+ + S+ + S + + QPP + +S+ + RP A E K W G + S S + + EFPTL G++ +A+ E +Q+ P + PQ S DG G + P+ +G+ P G P P FP G MPPF P+ R P PP + + RPS +K+ +L+ D+ EN GWA A +EVDY KL F +
Sbjct: 10 KGKD-GKKYSSLNLFDTYKGKSLEIQKPAVAPRHGLQSLGKVAIARRMPPPANLPSLKAENKGNDPNVSLVPKDGTGWASKQ--EQSDPKSSDASTAQPPESQPLPASQTPASNQPK-RPPAAPENTPLVPSGVKSWAQASVTHGAHGDGGRASSLLSRFSREEFPTLQAAGDQDKAAKERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHD----------PRGGLQPSGPPQFPP--YRGMMPPFMYPPYLPFPPPYGPQGPYRYPTPDGPSRFPRVAGPRGSGPPMRLVE-PVGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDYTEKLKFSD 343 The following BLAST results are available for this feature:
BLAST of TCONS_00058821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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