TCONS_00054699 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054699
Unique NameTCONS_00054699
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054699 ID=TCONS_00054699|Name=TCONS_00054699|organism=Clytia hemisphaerica|type=transcript|length=1332bp
TAAAAATTCACAACATCACCGATTTATGATATTTCCTTATAAttataaat
tataatttttttgtgttgatttcattttgtatcaaataaaaaaagaaact
cATCTGCCAACTACTACTATGACAacgtatttttcttttttttggacaCA
CTGTATATTATCAATTAAATCACAAAACTAGCCGAAGATAACTCGTGACA
TGGTGACAAATTCTCTCGTTTTAAAGAATAGTTTTCGTACTCTtaaacaa
acttatttttcaaccATTTCGCAGCCAAACACTCTTTGAAACTTGTCCAG
CAAATGTGGAGTGACGTGTTCTACAGTCACGATATCGTCCAGTTGTCGTG
ACAACGAAGTCACGCTTTTTCCGTGTAATCCACACGGTACGATATGTCCA
AACCATGATAGATCAGTGTTACAGTTCAATGCTAAACCATGACTGGTAAT
ATGTCTCTGGCAATGAACTCCAATAGCAGCAATCTTGTCATTTCCGATCC
AGATACCAACGTCATCAGTGCGATGCGTCTCCACACCAAATTGTTGACAA
GTATCCATGACAACTTGCTCCAGTTTGTGTATATAGCAACGCAACGTCCA
TccgtaatttttcaaattcaaaacaggGTAACAAACTAATTGTCCAGGAC
CATGGAAAGTGATCAAACCACCACNACGCAACGTCCATccgtaatttttc
aaattcaaaacaggGTAACAAACTAATTGTCCAGGACCATGAAAAGTGAT
CAAACCACCACGATCTGTGTATTGATATTCAGCATCTAATTCCTTTAGtc
tgttaatcacttcagtgtccATGTAATCTTTGGTTCGAATTCCAACAGTG
TAGACCGGGTGATGCTGACAAAGAAATAAATAATCGTCTACTATCTCAGG
TGGTTGTTTATCTTTTCCAGGCATCTTTGCTTCCACTATTCTTTTCATGG
TTGACATTACAGCCGAATAGGGTTGCAAACCAAGGCTTTGAATGATGACC
TTTTTGTTAAACAAGGCTCTGGATAACCacatttttcttcacttttaact
atttttattattttactaTTTCTTAATTTATACGTctataagaaaaaaag
attgCATCATTAGTAATGAATCAAGACTTTCTCGAACATATAAGGCAACC
GCAGCTGTAGCACTGTGGCAGAATGCACGTGTCCGCAGTTGTTAATTTTT
TAGGGCGTCAAAAGACATTTTATAGAGCACTTTTCCTCTATCTTGCTGCG
AAAACTAAGTAAAATGAgttgtttttcattgttttcatccTCCTTTTTCT
TTCCCTTCTCCTTTTCCTctccttcatttttt
Run BLAST on NCBI

protein sequence of TCONS_00054699-protein

>TCONS_00054699-protein ID=TCONS_00054699-protein|Name=TCONS_00054699-protein|organism=Clytia hemisphaerica|type=polypeptide|length=259bp
MWLSRALFNKKVIIQSLGLQPYSAVMSTMKRIVEAKMPGKDKQPPEIVDD
YLFLCQHHPVYTVGIRTKDYMDTEVINRLKELDAEYQYTDRGGLITFHGP
GQLVCYPVLNLKNYGWTLRXGGLITFHGPGQLVCYPVLNLKNYGWTLRCY
IHKLEQVVMDTCQQFGVETHRTDDVGIWIGNDKIAAIGVHCQRHITSHGL
ALNCNTDLSWFGHIVPCGLHGKSVTSLSRQLDDIVTVEHVTPHLLDKFQR
VFGCEMVEK
Run BLAST on NCBI

transcript from alignment at scaffold_243:641842..643173

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054699 ID=TCONS_00054699|Name=TCONS_00054699|organism=Clytia hemisphaerica|type=transcript|length=1332bp|location=Sequence derived from alignment at scaffold_243:641842..643173 (Clytia hemisphaerica)
aaaaaatgaaggagAGGAAAAGGAGAAGGGAAAGAAAAAGGAggatgaaa
acaatgaaaaacaacTCATTTTACTTAGTTTTCGCAGCAAGATAGAGGAA
AAGTGCTCTATAAAATGTCTTTTGACGCCCTAAAAAATTAACAACTGCGG
ACACGTGCATTCTGCCACAGTGCTACAGCTGCGGTTGCCTTATATGTTCG
AGAAAGTCTTGATTCATTACTAATGATGcaatctttttttcttatagACG
TATAAATTAAGAAAtagtaaaataataaaaatagttaaaagtgaagaaaa
atgtGGTTATCCAGAGCCTTGTTTAACAAAAAGGTCATCATTCAAAGCCT
TGGTTTGCAACCCTATTCGGCTGTAATGTCAACCATGAAAAGAATAGTGG
AAGCAAAGATGCCTGGAAAAGATAAACAACCACCTGAGATAGTAGACGAT
TATTTATTTCTTTGTCAGCATCACCCGGTCTACACTGTTGGAATTCGAAC
CAAAGATTACATggacactgaagtgattaacagaCTAAAGGAATTAGATG
CTGAATATCAATACACAGATCGTGGTGGTTTGATCACTTTTCATGGTCCT
GGACAATTAGTTTGTTACcctgttttgaatttgaaaaattacggATGGAC
GTTGCGTNGTGGTGGTTTGATCACTTTCCATGGTCCTGGACAATTAGTTT
GTTACcctgttttgaatttgaaaaattacggATGGACGTTGCGTTGCTAT
ATACACAAACTGGAGCAAGTTGTCATGGATACTTGTCAACAATTTGGTGT
GGAGACGCATCGCACTGATGACGTTGGTATCTGGATCGGAAATGACAAGA
TTGCTGCTATTGGAGTTCATTGCCAGAGACATATTACCAGTCATGGTTTA
GCATTGAACTGTAACACTGATCTATCATGGTTTGGACATATCGTACCGTG
TGGATTACACGGAAAAAGCGTGACTTCGTTGTCACGACAACTGGACGATA
TCGTGACTGTAGAACACGTCACTCCACATTTGCTGGACAAGTTTCAAAGA
GTGTTTGGCTGCGAAATggttgaaaaataagtttgtttaAGAGTACGAAA
ACTATTCTTTAAAACGAGAGAATTTGTCACCATGTCACGAGTTATCTTCG
GCTAGTTTTGTGATTTAATTGATAATATACAGTGtgtccaaaaaaaagaa
aaatacgtTGTCATAGTAGTAGTTGGCAGATgagtttctttttttatttg
atacaaaatgaaatcaacacaaaaaaattataatttataaTTATAAGGAA
ATATCATAAATCGGTGATGTTGTGAATTTTTA

Coding sequence (CDS) from alignment at scaffold_243:641842..643173

>TCONS_00054699 ID=TCONS_00054699|Name=TCONS_00054699|organism=Clytia hemisphaerica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_243:641842..643173 (Clytia hemisphaerica)
atgtGGTTATCCAGAGCCTTGTTTAACAAAAAGGTCATCATTCAAAGCCT
TGGTTTGCAACCCTATTCGGCTGTAATGTCAACCATGAAAAGAATAGTGG
AAGCAAAGATGCCTGGAAAAGATAAACAACCACCTGAGATAGTAGACGAT
TATTTATTTCTTTGTCAGCATCACCCGGTCTACACTGTTGGAATTCGAAC
CAAAGATTACATggacactgaagtgattaacagaCTAAAGGAATTAGATG
CTGAATATCAATACACAGATCGTGGTGGTTTGATCACTTTTCATGGTCCT
GGACAATTAGTTTGTTACcctgttttgaatttgaaaaattacggATGGAC
GTTGCGTNGTGGTGGTTTGATCACTTTCCATGGTCCTGGACAATTAGTTT
GTTACcctgttttgaatttgaaaaattacggATGGACGTTGCGTTGCTAT
ATACACAAACTGGAGCAAGTTGTCATGGATACTTGTCAACAATTTGGTGT
GGAGACGCATCGCACTGATGACGTTGGTATCTGGATCGGAAATGACAAGA
TTGCTGCTATTGGAGTTCATTGCCAGAGACATATTACCAGTCATGGTTTA
GCATTGAACTGTAACACTGATCTATCATGGTTTGGACATATCGTACCGTG
TGGATTACACGGAAAAAGCGTGACTTCGTTGTCACGACAACTGGACGATA
TCGTGACTGTAGAACACGTCACTCCACATTTGCTGGACAAGTTTCAAAGA
GTGTTTGGCTGCGAAATggttgaaaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034460XLOC_034460Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054699-proteinTCONS_00054699-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054699-exon-scaffold_243-1491911889:641842..643173TCONS_00054699-exon-scaffold_243-1491911889:641842..643173Clytia hemisphaericaexon
TCONS_00054699-exon-scaffold_243-1510915933:641842..643173TCONS_00054699-exon-scaffold_243-1510915933:641842..643173Clytia hemisphaericaexon
TCONS_00054699-exon-scaffold_243-1575043694:641842..643173TCONS_00054699-exon-scaffold_243-1575043694:641842..643173Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_243supercontigscaffold_243:641842..643173 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.93928	5.82254	3.29084	4.44441	1.83195	1.91895	3.69609	4.9432	4.36599	3.36351	3.13667	2.75625	1.7439	1.44012	0.807252	2.21389	8.15829	8.26475	0.973905	1.51111	2.19923	2.41359	5.9043	4.28112	6.54634	5.53973	2.85904	2.0804	3.71685	3.50108
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000544Octanoyltransferase
IPR004143BPL_LPL_catalytic
IPR020605Octanoyltransferase_CS
Vocabulary: Biological Process
TermDefinition
GO:0009107lipoate biosynthetic process
GO:0006464cellular protein modification process
Vocabulary: Molecular Function
TermDefinition
GO:0033819lipoyl(octanoyl) transferase activity
GO:0016415octanoyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006464 cellular protein modification process
biological_process GO:0009107 lipoate biosynthetic process
cellular_component GO:0005737 cytoplasm
molecular_function GO:0033819 lipoyl(octanoyl) transferase activity
molecular_function GO:0016415 octanoyltransferase activity
Blast
[Close]
BLAST of TCONS_00054699 vs. Swiss-Prot (Human)
Match: LIPT2 (Putative lipoyltransferase 2, mitochondrial OS=Homo sapiens GN=LIPT2 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.545e-42
Identity = 99/259 (38.22%), Postives = 134/259 (51.74%), Query Frame = -1 
Query:  256 LFNKKVIIQSLGLQPYSAVMSTMKRIVE--AKMPGKDKQPPEIVDDYLFLCQHH-PVYTVGIRTKDYMDTEVINRLKELDAEYQYTDRGGLITFHGPGQLVCYPVLNLKNYGWTLRXGGLITFHGPGQLVCYPVLNLKNYGWTLRCYIHKLEQVVMDTCQQFGVETHRTDD---VGIWIGNDKIAAIGVHCQRHITSHGLALNCNTDLSWFGHIVPCGLHGKSVTSLSRQLDDIVTVEHVTPHLLDKFQRVFGCEMVEK 1014
            +    V +  LG  PY+ ++    R +      PG +  P       L LC+   PVYT G+R    +  E   RL+ L AE + T RGGL T                             FHGPGQL+C+PVL+L+  G  LR ++  LE   +  C+  G++  R       G+W+ + KI AIGV C RHITSHGLALNC+TDL+WF HIVPCGL G  VTSLS++L   VTVE V P  L  F+ ++ C ++ +
Sbjct:    1 MRQPAVRLVRLGRVPYAELLGLQDRWLRRLQAEPGIEA-PSGTEAGALLLCEPAGPVYTAGLRGG--LTPEETARLRALGAEVRVTGRGGLAT-----------------------------FHGPGQLLCHPVLDLRRLGLRLRMHVASLEACAVRLCELQGLQDARARPPPYTGVWLDDRKICAIGVRCGRHITSHGLALNCSTDLTWFEHIVPCGLVGTGVTSLSKELQRHVTVEEVMPPFLVAFKEIYKCTLISE 227
The following BLAST results are available for this feature:
BLAST of TCONS_00054699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LIPT23.545e-4238.22Putative lipoyltransferase 2, mitochondrial OS=Hom... [more]
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