TCONS_00051393 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051393
Unique NameTCONS_00051393
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051393 ID=TCONS_00051393|Name=TCONS_00051393|organism=Clytia hemisphaerica|type=transcript|length=647bp
taaatttcaaaCAGCTATGATTTGTGATAAATTGTGgctatcaaaaaaag
aaaaaaatcccaAAAGAGGAATATACTAATTTTTTTGTTCCGAAAAGAAC
GAAGTCTGTAGTGTAATTGAGCAGCGTTTAAAAAGCGTTTGAACTGTGTG
AAAAAATGCGGCTAATTTTCACTGCGGCTAACCATGCAAAGCTCACTTGA
AAGCCCTATAACTTCTTTACGGATGAGGGAAGCAAGTCAAGATTTCGGGG
ATACCCTGGTAAAGGACTGGAGAAACCATATCTGTGAAGAAATGTGGCTC
AAGTCAttaaatttAAACCTTGGTTTGTCAAGGGATTGTGAGAAAGTAAA
TTCTTATCATATTTTGTGAATgaTGTCGCTGTTTAATCATTAAGGTCTTT
GGCAAAATTTAGCCACATTTTTTCCCTCAAAATGACTATCAAGACTTTTC
AATTGAGTTTGTTTAATTGTGGAAGGTTTAAAAATACTTTATATGacaaa
tttctcatcttttgaaCTTGTTTTAATAGTAAATCATAGCGTCATCTTAT
TTATGTTgtatttttagtgattttttactaattttggataattttagATA
CTAGAGAGTTCGAGTACTTTAGCCACATTTTAACCCATATTCTACAC
Run BLAST on NCBI

transcript from alignment at scaffold_201:636302..639414+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051393 ID=TCONS_00051393|Name=TCONS_00051393|organism=Clytia hemisphaerica|type=transcript|length=3113bp|location=Sequence derived from alignment at scaffold_201:636302..639414+ (Clytia hemisphaerica)
taaatttcaaaCAGCTATGATTTGTGATAAATTGTGgctatcaaaaaaag
aaaaaaatcccaAAAGAGGAATATACTAATTTTTTTGTTCCGAAAAGAAC
GAAGTCTGTAGTGTAATTGAGCAGCGTTTAAAAAGCGTTTGAACTGTGTG
AAAAAATGCGGCTAATTTTCACTGCGGCTAACCATGCAAAGCTCACTTGA
AAGCCCTATAACTTCTTTACGGATGAGGGAAGCAAGTCAAGATTTCGGGG
ATACCCTGGTAAAGGACTGGAGAAACCATATCTGTGAAGAAATGTGGCTC
AAGTCAttaaatttgtgagtatttgtggtttatttttgaaaaacaatatc
CTTTGACAAAAAGCATGTTTTACNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNAGAAAGTGATAAAATGTGGTTTTCT
ATGATAAACAGGTGTTTTTAACAAAAACCACTATCTTTCCCAGAATCCTG
CCAGAGCTAAAAGTTAATTTTTGCACATAATAGGatctaatattttttta
catattaaaTCAACTGTATTTATGGTGTTAAAAGTGATTATATGTGGCta
atttaacatatttttacaagctacatttctttaaaattggaaacattatt
ATCCTGACTTTACTTTTAGAAACCTTGGTTTGTCAAGGGATTGTGAGAAA
GTAAATTCTTATCATATTTTGTGAATGTAGGTGGCTACTTTAACGTGACT
GCAAATATATTCTCTCTACCTATAAACCTTAGTGAAAATGTGTGGTTTTT
CATCAAAAAATGATGTTTTTCAATAAAAACCACAAATTCTCCCAGAATCT
TACAAGCTTAAAGGTTCAATTAAAACCAAATAAGAATCACATAACATTTT
TGCAGCAATGCACAcaatttattttaataaaagtGATTAAGTGTGGCTAA
AATTGAATATTCTTACANCACAcaatttattttaataaaagtGATTAAGT
GTGGCTAAAATTTAATATTCTTACAAGCCGGTTTGAAGGCATCTATTAGT
ttagaattggaaacattactATGCTGACTGGtacttttagaaacttttgt
tttACGTTTGTCAAAGGATTTGAGGAAGTAAATTCTTATTCCATTTTGTG
AATTTAAGTGGCTACTTTGATCCACATATAATTATTTATATTCTCATTAA
CATAACTCTGACAATTTAATTTTCTCAGCAAAAAGTATTGAGTAGAATTG
tagaattttcagaattttcagctttagccacactttttcactttattttt
attctagtgatatgattttttaaaatcattttaaaaagacaatttcTATT
CCAAtcatttctgataatttttttgtttttatttcaggaTGTCGCTGTTT
AATCATTAAGGTCTTTGGCAAAATTTAGCCACATTTTTTCCCTCAAAATG
ACTATCAAGACTTTTCAATTGAGTTTGTTTAATTGTGGAAGGTTTAAAAA
TACTTTATATGacaaatttctcatcttttgaaCTTGTTTTAATAGTAAAT
CATAGCGTCATCTTATTTATGTTgtatttttagtgattttttactaattt
tggataattttagATACTAGAGAGTTCGAGTACTTTAGCCACATTTTAAC
CCATATTCTACAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032567XLOC_032567Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051393-exon-scaffold_201-1491911889:636302..636615TCONS_00051393-exon-scaffold_201-1491911889:636302..636615Clytia hemisphaericaexon
TCONS_00051393-exon-scaffold_201-1510915933:636302..636615TCONS_00051393-exon-scaffold_201-1510915933:636302..636615Clytia hemisphaericaexon
TCONS_00051393-exon-scaffold_201-1575043694:636302..636615TCONS_00051393-exon-scaffold_201-1575043694:636302..636615Clytia hemisphaericaexon
TCONS_00051393-exon-scaffold_201-1491911889:638421..638477TCONS_00051393-exon-scaffold_201-1491911889:638421..638477Clytia hemisphaericaexon
TCONS_00051393-exon-scaffold_201-1510915933:638421..638477TCONS_00051393-exon-scaffold_201-1510915933:638421..638477Clytia hemisphaericaexon
TCONS_00051393-exon-scaffold_201-1575043694:638421..638477TCONS_00051393-exon-scaffold_201-1575043694:638421..638477Clytia hemisphaericaexon
TCONS_00051393-exon-scaffold_201-1491911889:639139..639414TCONS_00051393-exon-scaffold_201-1491911889:639139..639414Clytia hemisphaericaexon
TCONS_00051393-exon-scaffold_201-1510915933:639139..639414TCONS_00051393-exon-scaffold_201-1510915933:639139..639414Clytia hemisphaericaexon
TCONS_00051393-exon-scaffold_201-1575043694:639139..639414TCONS_00051393-exon-scaffold_201-1575043694:639139..639414Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_201supercontigscaffold_201:636302..639414 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.183267	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051393 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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