BlTCONS00062424 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00062424
Unique NameBlTCONS00062424
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



Full-screen view
Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000049:1047921..1049535-

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00062424 ID=BlTCONS00062424|Name=BlTCONS00062424|organism=Branchiostoma lanceolatum|type=mRNA|length=1615bp|location=Sequence derived from alignment at Sc0000049:1047921..1049535- (Branchiostoma lanceolatum)
GCAAAACATACACGCAGTGCCGTAAATCAAAGATACAGAACAGAACGGAC
AAAGACATGCAGACAAATCATCATTAATCATTGTCAAACACAAGGCAAGT
CTGTTGCTCTAGAGTAAGTACAAAATTGGTCTGTTGAACTAAACGCAATT
GTTGGACAATGTTTATTTGTATCCTTATGGGAAAAAAGCCCGGTATCTAT
TGTTTACTTTTAGTTGTTTTTTGCTGGGAGTCTCATGCGACCATTGGAGC
TGGCTCAGGCTAATTTGGAAAAGTTAACTTGTGGCAGCAACCAAATATGA
CATCTGTTTTCTTGTTCCAGGTGTTCACTCCATTTTCTCATCACCAAGAA
ACTACCACCTGTCTCACTCCGTGGGGAACCACATTCCCGCAGCGACCATG
CGACCGCAGTCCGCCATGTCCGCCTTCAGCTACACCTCGTCCCCGGTACA
CGAGGAATATGACCCGTACGAGAGGCAGTTCATCTCAAGTCCAACGATTC
CGAAGACACACATGCCACACTCGGCACAAATTGCCATGGCTAGGAGGGGT
GGTTGGGACAGGTATGGGCTGAGTCTGCCCAGGGAACTCACCTATTATTG
AACCAACGATCAGCAACACTAACACAACTTGCAGTACTTCTGAGAACTGA
CAGAGGTCTCTGTTGCACTATCCTTGCAGAACAGTTGGCTTCCTTACTAA
GACAGCAAAGAGATGTTTTTCTTTCACCTTTTCGTTCAGAAACAGACCTG
AACATTCTGTAAATTCTTTGGTGGAAGAGGGGATACACACACAGGCTGCC
TTACAGATCTAGAGACACTTCATATATACTGTGGTGTACAAAAAAGTCAC
AATATTTGTACCTGAGGACACTAAAAGAATCCACCAAGAGTCATGTGCAA
TACAGAGACGGAAAAGGGTTGAATGGTGGGTAGAATTTAGATAAGGTTTT
GTAAGATAAACTGGTGGAAAATAGCTAGCCTAAGAGTTAATTTCAATAGA
ACATATTCACAATGTATGCAAAGGGGATAAAACAGTAAATGTTGTATGTA
GTTTGTAACCTTCAAATAGAGTTGTTCTGCAACAGCTTTTCATGTATATT
TTTGAGACAATAGCTATGATGATATGGTTAAGACTCAGCTGATGCTGCTA
CCTAGTTAGTCCTACTGTTAGATGATACTTCTCAAACGATGGAGAAATCA
AGAGCAAAGTTGTAAGATTCATATCTGATCTGGCAGCTGATAATGATAGT
TGACAAACTGGGTGTCGATATTTTGTGGAAAATATCCTTTTGTAGTCATA
GGTAGGAACATACGGTTTAAATGTAAAAGAAATATTTTCATGCTATTTTT
ATCTGATCTACATACAAGCAAATAAAGAGCATGCTGAAAAGTGAATAATT
GTGTTGTTTTCTCACAAACCAAGAAAGAAACAACAATTCATGCTACAACT
TTAGGAGCAATATATAGCTATCCACATACTATGGCCTTCAATTGTCAGAA
ATGGCCGTGGAAAATTCTAGTTCAGTGTTGCCTATGAACGTACAGTCCAA
TCCATGAATGACAGTCTATATCATAAGACCAAGGAGTCAGCAAGAAGTGT
TGACTACTTGTTCTT

Coding sequence (CDS) from alignment at Sc0000049:1047921..1049535-

>BlTCONS00062424 ID=BlTCONS00062424|Name=BlTCONS00062424|organism=Branchiostoma lanceolatum|type=CDS|length=375bp|location=Sequence derived from alignment at Sc0000049:1047921..1049535- (Branchiostoma lanceolatum)
GCAAAACATACACGCAGTGCCGTAAATCAAAGATACAGAACAGAACGGAC
AAAGACATGCAGACAAATCATCATTAATCATTGTCAAACACAAGGTGTTC
ACTCCATTTTCTCATCACCAAGAAACTACCACCTGTCTCACTCCGTGGGG
AACCACATTCCCGCAGCGACCATGCGACCGCAGTCCGCCATGTCCGCCTT
CAGCTACACCTCGTCCCCGGTACACGAGGAATATGACCCGTACGAGAGGC
AGTTCATCTCAAGTCCAACGATTCCGAAGACACACATGCCACACTCGGCA
CAAATTGCCATGGCTAGGAGGGGTGGTTGGGACAGGTATGGGCTGAGTCT
GCCCAGGGAACTCACCTATTATTGA
Gene-mRNA-Prot
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062424-exon-Sc0000049-1564993656:1049442..1049535BlTCONS00062424-exon-Sc0000049-1564993656:1049442..1049535Branchiostoma lanceolatumexon
BlTCONS00062424-exon-Sc0000049-1564993656:1047921..1049215BlTCONS00062424-exon-Sc0000049-1564993656:1047921..1049215Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062424BlTCONS00062424-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000049genomeSc0000049:1047921..1049535 -
Properties
Property NameValue
GeneIDBlCUFF030698