BlTCONS00062334 (mRNA) - B. lanceolatum

Overview
NameBlTCONS00062334
Unique NameBlTCONS00062334
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

mRNA from alignment at Sc0000049:609917..612278-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>BlTCONS00062334 ID=BlTCONS00062334|Name=BlTCONS00062334|organism=Branchiostoma lanceolatum|type=mRNA|length=2362bp|location=Sequence derived from alignment at Sc0000049:609917..612278- (Branchiostoma lanceolatum)
GTAAGAACGTACTGCAGAATAGCAAGACAAAAGAACAATGGTATTAATGA
GAAATGTTACATTTTGAACATATAGATATCACTTTTAAGTGATAAAAAAG
TTTAAAGTTGTAACATTTTTTTGGTCTCTGGATCTTTGTTCATCTGTGCA
ATCAACAGACTCAGATGGTTTTCGTTAACTAAATGAGATCCCACTACCAA
AATTATATTCTGTAAACTACCACAGCCAAGATCCGTATCACATATGTGAA
CTACTGATTAATTTGCATATTGATATTTCGTAGGACATGATAAGAAAGGT
TGACGTGGATGGAGATGGAACCACCAACTTCTCGGAGTTCCTGCGCCTTG
TGGGTCGGAAGAGCTCCAGAGAGAAGACAGAGCAAGAGCTTCAGGATGCG
TTTCATGCATTCGACAAAGTAAGGCCGAGGAAAAGGAGTATTTCCGGTTA
CCCGACCGACCCTAGCAAAAACCTGCCAACCCTAGTCTTATTTTGTTGAC
CCGCTAACACTGTCCTGATGCTGTCTAGCGTTGCAATCTTAAACAGTATT
TCTTGGGTCACTTCGACTGCACTTTTAAAAAAAGAAGAAAGAGAACCCTT
ACCCAGCGACACTAATTTATGAGTACTGTAACCGGAATCACAACATTTTC
TATTATGCCTAACGGCATGTCATGAATTGTTTGATAGTACCTAGCCTCCT
GTACAACCCTTCCGGGTGGCAGGCCAGTAGCTTTTTTCGCCGATTTGCGC
TGTTTTCTGATTGCTCGTGTACTCTAATATATATGCTTCTAGAGTTGGCG
CACTAATCAAGCTTGGTCATATTAGAACACTAACTTGCGAACGATTAGAA
ATAGCGCAAATCAACCAAAGGGCCATAGAAAGCCACCAGCCATCCAGAAT
GTCTGCGTATAAGGCTGGGTAAGGATGATACCACAGAACCAAAGGCAATG
GGTGTTTAAAGCCATATTTTGTATGCAAAGTAAACTTAAAAGTCGATTTT
CTTTTGTACATGTAACTAAATCCCGCTTTAGAGTTCTCATTTAGGTTCAT
TTCAGCACCAAGGACAGGGAAGTAACATTATCATTGACATTTAAAAAGTC
CATATACGTTCAATGTAAGAATACGATTTTGGGGATCGATGGGACACCAC
GTACAAAGGACGAGACAAAAGCTAAGAGGTGTAACTGTAGTATGATATCT
CTGAGTGTATTGTCTGGGAAGACTCAGTGGACTGGTTTGAACCGGCTGGG
CTATACCATTCTATGCACATATGCGGGGCTGCACATTGGTAACGTTACCT
CGCACTATAGCCAAGCAGAAATGAAAAATAAAACACAAAAATGAAAATAT
TTGACGGACATGCAACCACTCTCGAACCACTAATTGCAGTACTGTCATTG
GTTGGACAGTTAATTGTGATGGACAGTCAGTATCGGTCTATTTATTTATC
TTGCTGCTCAACGTTTCCAGGATGGCAGCGGGTACATCACCCAGACAGAG
CTGCGTCACGTGGTGTCCAGCCTGGGGATGGAGTTGACGGATGAAGAGCT
GATGAAGATCATGCGGGAGGCTGACAGGGATGGAGATGGTCAGGTGAGGA
CCAGGGACAGAACTATGTGTCTCGTTTTGTACGATGTGACCTTCTGTACT
ACTTACGCAGTCATGTGGAATATAGATTACGCAGCCTTTTACAATTTTCC
TGGTTATGATATTTGACCATGTACAATGTCCGGGTAGAAATGGGGATCTG
GCAGATCGGCGATTCTACCGGCAGAGATAGCGATCAGAGTCTCTGTCGGG
ATCTCTACTGGTAACGTTACACGACAGAATTACCGATTGTACTAGTAAAG
ATCCTGATCGTGATCTCTGTCCACAGAGGCTCATGTTTACATGGCATGGT
ACAATCGCCGATTGTACTGGAAGAGATCCTGATGTCTTGACAGAGGCTCC
GATCACGATTTCTACCGGAAGAATCGCCGAATCATCAAGTTCTACCTGAT
TGCGATCTTTACCCTCGCATATACATTAGATGTTACAACAACAACAAAAA
TTCAAGGCTGAAGAAATGTAAGAAAATTAGTAGCCGTATTAAATGAAACT
TGTGACGGTTCTTCGTAACCCCCGACTCACAACTTTTTTAAATGTTTTAT
TTCCTCTATAGATCAGCTATCAAGAGTTCGTCAAGACGTTGGGCGTGAAA
TGAAGCTGCCGACTACATACATGCCTCTCAGCTATGTTGTGTAGAAAAAT
AAAAGATCCTTAGGTGTAACACACCAGCTTCAGTGTGACTTATACGACAT
ACCGGATTGCTTTGACGTAAATGATAAGGAAAACTTGGCAATAAAGAACA
TGTAACTGTAAG

Coding sequence (CDS) from alignment at Sc0000049:609917..612278-

>BlTCONS00062334 ID=BlTCONS00062334|Name=BlTCONS00062334|organism=Branchiostoma lanceolatum|type=CDS|length=303bp|location=Sequence derived from alignment at Sc0000049:609917..612278- (Branchiostoma lanceolatum)
ATGGACATGATAAGAAAGGTTGACGTGGATGGAGATGGAACCACCAACTT
CTCGGAGTTCCTGCGCCTTGTGGGTCGGAAGAGCTCCAGAGAGAAGACAG
AGCAAGAGCTTCAGGATGCGTTTCATGCATTCGACAAAGATGGCAGCGGG
TACATCACCCAGACAGAGCTGCGTCACGTGGTGTCCAGCCTGGGGATGGA
GTTGACGGATGAAGAGCTGATGAAGATCATGCGGGAGGCTGACAGGGATG
GAGATGGTCAGATCAGCTATCAAGAGTTCGTCAAGACGTTGGGCGTGAAA
TGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062334BlTCONS00062334-proteinBranchiostoma lanceolatumpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BlTCONS00062334-exon-Sc0000049-1564993656:612239..612278BlTCONS00062334-exon-Sc0000049-1564993656:612239..612278Branchiostoma lanceolatumexon
BlTCONS00062334-exon-Sc0000049-1564993656:611861..611995BlTCONS00062334-exon-Sc0000049-1564993656:611861..611995Branchiostoma lanceolatumexon
BlTCONS00062334-exon-Sc0000049-1564993656:610686..610808BlTCONS00062334-exon-Sc0000049-1564993656:610686..610808Branchiostoma lanceolatumexon
BlTCONS00062334-exon-Sc0000049-1564993656:609917..610117BlTCONS00062334-exon-Sc0000049-1564993656:609917..610117Branchiostoma lanceolatumexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Sc0000049genomeSc0000049:609917..612278 -
Properties
Property NameValue
GeneIDBlCUFF030681