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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045638 ID=TCONS_00045638|Name=TCONS_00045638|organism=Clytia hemisphaerica|type=transcript|length=1961bpRun BLAST on NCBI protein sequence of TCONS_00045638-protein >TCONS_00045638-protein ID=TCONS_00045638-protein|Name=TCONS_00045638-protein|organism=Clytia hemisphaerica|type=polypeptide|length=596bp MNKEFKDEQKVNSVSIKIGPEDAFLDFFGEEKHEIVDTNINDDISLKIKIRun BLAST on NCBI transcript from alignment at scaffold_10:321924..323884 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00045638 ID=TCONS_00045638|Name=TCONS_00045638|organism=Clytia hemisphaerica|type=transcript|length=1961bp|location=Sequence derived from alignment at scaffold_10:321924..323884 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_10:321924..323884 >TCONS_00045638 ID=TCONS_00045638|Name=TCONS_00045638|organism=Clytia hemisphaerica|type=CDS|length=1791bp|location=Sequence derived from alignment at scaffold_10:321924..323884 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00045638 vs. Swiss-Prot (Human)
Match: ZN665 (Zinc finger protein 665 OS=Homo sapiens GN=ZNF665 PE=2 SV=2) HSP 1 Score: 405.216 bits (1040), Expect = 7.465e-132 Identity = 203/427 (47.54%), Postives = 264/427 (61.83%), Query Frame = -1
Query: 261 QSFKCNVCGKAFKFNCDLNNHLGIHTGERPFECQDCGKCFTQQSSLNAHLKIHNDIESFKCEECCKSFRSKYLLKNHLREHTGEPLSKCRECGKCFKIKSYLINHNKIHTGEKPFKCQECGKCFTQQSGLNAHVKIHTGVKPFKCQECGKCFTQQSGLNAHVKIHTGVKPFKCQECGKCFAKRSVLTQHFIVHSSIKPFKCEECGNCFKTNDSLKQHKRIHTKEKTFKCEECGNCFKTNDSLKQHKRIHTKEKTFKCEECGNCFKTNDSLKHHKRIHTKEKPFKCEECGDSFLRKKILKVHMRIHTGKKPFKCKECGKCFSKADSLNRHLYLHSEIEPFKCAESGKQFSQRVNLIHHSNIHNGIKSFKGKERGKFFSRKDSLNIHMKTHKRKEHDQIVEQENDFRCNKCDECFNSLSHLTAHAKSHS 1541
+ +KCN CGKAF+ + L H IHTGE+P++C++CGKCFTQ S L +H +IH + +KC EC K+F + L H HTGE KC ECGK F+ SYL H +IHTGEKP+KC ECGK F+ S L H IHTG KPFKC EC K FTQ S L H +IHTG KP++C ECGK F+ RS LT H +H+ KP+KC +CG F N L H+ IH+ EK +KC+ECG F L +H R+HT EK +KC ECG F + SL H+ IHT +KP+KC +CG F L +H RIHTG+KP+KC ECGK FS +L H +H+ +P+KC E GK F+Q +L +H IH G K ++ E GK FS + +L HM H + ++CN+C + F S+L H + HS
Sbjct: 195 KPYKCNECGKAFRAHSKLTTHQVIHTGEKPYKCKECGKCFTQNSHLASHRRIHTGEKPYKCNECGKAFSVRSSLTTHQTIHTGEKPYKCNECGKVFRHNSYLAKHRRIHTGEKPYKCNECGKAFSMHSNLTKHQIIHTGEKPFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIHTGEKPYKCNDCGKVFTQNSHLASHRGIHSGEKPYKCDECGKAFSQTSQLARHWRVHTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECGKAFSVHSNLATHQVIHTGEKPYKCNECGKVFTQNSHLANHRRIHTGEKPYRCNECGKAFSVRSTLTTHMAVH---------TGDKPYKCNQCGKVFTQNSNLAKHRRIHS 612 HSP 2 Score: 394.43 bits (1012), Expect = 1.093e-127 Identity = 206/449 (45.88%), Postives = 262/449 (58.35%), Query Frame = -1
Query: 261 NRGQSFKCNVCGKAFKFNCDLNNHLGIHTGERPFECQDCGKCFTQQSSLNAHLKIHNDIESFKCEECCKSFRSKYLLKNHLREHTGEPLSKCRECGKCFKIKSYLINHNKIHTGEKPFKCQECGKCFTQQSGLNAHVKIHTGVKPFKCQECGKCFTQQSGLNAHVKIHTGVKPFKCQECGKCFAKRSVLTQHFIVHSSIKPFKCEECGNCFKTNDSLKQHKRIHTKEKTFKCEECGNCFKTNDSLKQHKRIHTKEKTFKCEECGNCFKTNDSLKHHKRIHTKEKPFKCEECGDSFLRKKILKVHMRIHTGKKPFKCKECGKCFSKADSLNRHLYLHSEIEPFKCAESGKQFSQRVNLIHHSNIHNGIKSFKGKERGKFFSRKDSLNIHMKTHKRKE-------------------HDQIVEQENDFRCNKCDECFNSLSHLTAHAKSHS 1550
NRG+ +KC+ CGK F N L +H IHTGE+P++C CGK FT +S+L H IH + +KC EC K F L H R HTGE KC ECGK F+ S L H IHTGEKP+KC+ECGKCFTQ S L +H +IHTG KP+KC ECGK F+ +S L H IHTG KP+KC ECGK F S L +H +H+ KP+KC ECG F + +L +H+ IHT EK FKC EC F L H+RIHT EK ++C+ECG F SL H+ IHT EKP+KC +CG F + L H IH+G+KP+KC ECGK FS+ L RH +H+ +P+KC E GK FS +L H IH G K +K + GK F L IH + H ++ H I E ++CN+C + F SHL H + H+
Sbjct: 108 NRGKHYKCDECGKVFSQNSRLTSHKRIHTGEKPYQCNKCGKAFTVRSNLTIHQVIHTGEKPYKCNECGKVFSQPSNLAGHQRIHTGEKPYKCNECGKAFRAHSKLTTHQVIHTGEKPYKCKECGKCFTQNSHLASHRRIHTGEKPYKCNECGKAFSVRSSLTTHQTIHTGEKPYKCNECGKVFRHNSYLAKHRRIHTGEKPYKCNECGKAFSMHSNLTKHQIIHTGEKPFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIHTGEKPYKCNDCGKVFTQNSHLASHRGIHSGEKPYKCDECGKAFSQTSQLARHWRVHTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECGKAFSVHSNLATHQVIHTGEKPYKCNECGKVFTQNSHLANHRRIHT 556 HSP 3 Score: 363.999 bits (933), Expect = 5.288e-116 Identity = 179/363 (49.31%), Postives = 231/363 (63.64%), Query Frame = -1
Query: 453 QSFKCNVCGKAFKFNCDLNNHLGIHTGERPFECQDCGKCFTQQSSLNAHLKIHNDIESFKCEECCKSFRSKYLLKNHLREHTGEPLSKCRECGKCFKIKSYLINHNKIHTGEKPFKCQECGKCFTQQSGLNAHVKIHTGVKPFKCQECGKCFTQQSGLNAHVKIHTGVKPFKCQECGKCFAKRSVLTQHFIVHSSIKPFKCEECGNCFKTNDSLKQHKRIHTKEKTFKCEECGNCFKTNDSLKQHKRIHTKEKTFKCEECGNCFKTNDSLKHHKRIHTKEKPFKCEECGDSFLRKKILKVHMRIHTGKKPFKCKECGKCFSKADSLNRHLYLHSEIEPFKCAESGKQFSQRVNLIHHSNIHNG 1541
+ +KCN CGKAF L H IHTGE+P++C +CGK F S L H +IH + +KC EC K+F L H HTGE KC EC K F S+L NH +IHTGEKP++C ECGK F+ +S L H IHTG KP+KC +CGK FTQ S L +H IH+G KP+KC ECGK F++ S L +H+ VH+ KP+KC ECG F + SL H+ IHT +K +KC +CG F+ N L H+RIHT EK +KC ECG F + +L H+ IHT EKP+KC ECG F + L H RIHTG+KP++C ECGK FS +L H+ +H+ +P+KC + GK F+Q NL H IH+G
Sbjct: 251 KPYKCNECGKAFSVRSSLTTHQTIHTGEKPYKCNECGKVFRHNSYLAKHRRIHTGEKPYKCNECGKAFSMHSNLTKHQIIHTGEKPFKCNECVKVFTQYSHLANHRRIHTGEKPYRCDECGKAFSVRSSLTTHQAIHTGEKPYKCNDCGKVFTQNSHLASHRGIHSGEKPYKCDECGKAFSQTSQLARHWRVHTGEKPYKCNECGKAFSVHSSLTIHQTIHTGQKPYKCNDCGKVFRHNSYLAIHQRIHTGEKPYKCNECGKAFSVHSNLATHQVIHTGEKPYKCNECGKVFTQNSHLANHRRIHTGEKPYRCNECGKAFSVRSTLTTHMAVHTGDKPYKCNQCGKVFTQNSNLAKHRRIHSG 613 HSP 4 Score: 164.466 bits (415), Expect = 3.599e-43 Identity = 95/231 (41.13%), Postives = 127/231 (54.98%), Query Frame = -1
Query: 192 KEKTFKCEECGNCFKTNDSLKQHKRIHTKEKTFKCEECGNCFKTNDSLKHHKRIHTKEKPFKCEECGDSFLRKKILKVHMRIHTGKKPFKCKECGKCFSKADSLNRHLYLHSEIEPFKCAESGKQFSQRVNLIHHSNIHNGIKSFKGKERGKFFSRKDSLNIHMKTHKRKEHDQIVEQENDFRCNKCDECFNSLSHLTAHAKSHS-ERIVLSD--GKSESKDSSTKKHQDL 875
+ K +KC+ECG F N L HKRIHT EK ++C +CG F +L H+ IHT EKP+KC ECG F + L H RIHTG+KP+KC ECGK F L H +H+ +P+KC E GK F+Q +L H IH G K +K E GK FS + SL H H E ++CN+C + F S+L H + H+ E+ + GK+ S S+ KHQ +
Sbjct: 109 RGKHYKCDECGKVFSQNSRLTSHKRIHTGEKPYQCNKCGKAFTVRSNLTIHQVIHTGEKPYKCNECGKVFSQPSNLAGHQRIHTGEKPYKCNECGKAFRAHSKLTTHQVIHTGEKPYKCKECGKCFTQNSHLASHRRIHTGEKPYKCNECGKAFSVRSSLTTHQTIH---------TGEKPYKCNECGKVFRHNSYLAKHRRIHTGEKPYKCNECGKAFSMHSNLTKHQII 330 The following BLAST results are available for this feature:
BLAST of TCONS_00045638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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