TCONS_00045524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045524
Unique NameTCONS_00045524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length250

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045524 ID=TCONS_00045524|Name=TCONS_00045524|organism=Clytia hemisphaerica|type=transcript|length=250bp
ATTGTCGGATAGACATGAAAAAGCTAGTGGAGTCGAAAAAAGGGATGAGT
TTTGTGTTTTTCTTGGCAAATTCCAGGTTGGAAAGCTCGAAAGAAGGTTC
TCAGATCGTTGGATGAAATTCTCTAGAAGTGCTGTCTTCATTTCTTAGCG
ATTGAAGGACatttaaaagaagtttgaagTCGAATTTCAAGGATTTGTCT
GTATAAAGTCCAAGAAAAAACGAACCTTTTTGGAAAACGATACAACAGTA
Run BLAST on NCBI

transcript from alignment at sc0008185:46..295

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045524 ID=TCONS_00045524|Name=TCONS_00045524|organism=Clytia hemisphaerica|type=transcript|length=250bp|location=Sequence derived from alignment at sc0008185:46..295 (Clytia hemisphaerica)
TACTGTTGTATCGTTTTCCAAAAAGGTTCGTTTTTTCTTGGACTTTATAC
AGACAAATCCTTGAAATTCGActtcaaacttcttttaaatGTCCTTCAAT
CGCTAAGAAATGAAGACAGCACTTCTAGAGAATTTCATCCAACGATCTGA
GAACCTTCTTTCGAGCTTTCCAACCTGGAATTTGCCAAGAAAAACACAAA
ACTCATCCCTTTTTTCGACTCCACTAGCTTTTTCATGTCTATCCGACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029101XLOC_029101Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045524-exon-sc0008185-1491911889:46..295TCONS_00045524-exon-sc0008185-1491911889:46..295Clytia hemisphaericaexon
TCONS_00045524-exon-sc0008185-1510915933:46..295TCONS_00045524-exon-sc0008185-1510915933:46..295Clytia hemisphaericaexon
TCONS_00045524-exon-sc0008185-1575043694:46..295TCONS_00045524-exon-sc0008185-1575043694:46..295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0008185supercontigsc0008185:46..295 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.59969	4.48392	3.32945	7.49933	6.20294	4.0847	4.92802	1.84542	4.31338	13.2193	3.27479	5.63149	4.3846	2.67473	2.98528	8.61236	3.89258	6.10132	4.07186	6.52845	0.909061	0	8.9678	3.55842	10.9471	12.4879	2.88506	1.43177	2.68608	4.11488
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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