TCONS_00045475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045475
Unique NameTCONS_00045475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045475 ID=TCONS_00045475|Name=TCONS_00045475|organism=Clytia hemisphaerica|type=transcript|length=245bp
AGATTGGCCATTCTATTGGATTGGAACATTCGAATCTTCGTGAAGCAGTC
ATGTATCCATGGTATCGAGGAAATGGCGGACGtgattttgatttgaatga
GGATGATGTCATTGGAGCTCAACATATTTATGGATCAAGATCACCAGACC
CAGAAGAATCAAAaactacaacaacaaccaccCTTGCACCTGGAGAAACA
ACGCCCTCCCTTCCACCCTCAGTTTGTATCAATCAATTCAAAGCC
Run BLAST on NCBI

transcript from alignment at sc0007976:140..653+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045475 ID=TCONS_00045475|Name=TCONS_00045475|organism=Clytia hemisphaerica|type=transcript|length=514bp|location=Sequence derived from alignment at sc0007976:140..653+ (Clytia hemisphaerica)
AGATTGGCCATTCTATTGGATTGGAACATTCGAATCTTCGTGAAGCAGTC
ATGTATCCATGGTATCGAGGAAATGGCGGACGtgattttgatttgaatga
GGATGATGTCATTGGAGCTCAACATATTTATGGTAAGCTGATGTTCGGTC
GTTCTAAGAAGCTTTAGTTTAAATTAAGAGCAGGGGATAACTATGAATTG
GGATGGCCAGATCAAAAATTTAATCNATGTTCGGTCGTTCTAAGAAGCTT
TAGTTTAAATTAAGAGCAGGGGATAACTATGAATTGGGATGGCCAGATCA
AAAATTTAATCGCATTTTCATTTAACCAAGGAATATAATTTcagaatttc
ataaaaattaaaatattgcaTTTCTTCTAAAATTCCACTTTTCACAAATA
GGATCAAGATCACCAGACCCAGAAGAATCAAAaactacaacaacaaccac
cCTTGCACCTGGAGAAACAACGCCCTCCCTTCCACCCTCAGTTTGTATCA
ATCAATTCAAAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029052XLOC_029052Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045475-exon-sc0007976-1491911889:140..271TCONS_00045475-exon-sc0007976-1491911889:140..271Clytia hemisphaericaexon
TCONS_00045475-exon-sc0007976-1510915933:140..271TCONS_00045475-exon-sc0007976-1510915933:140..271Clytia hemisphaericaexon
TCONS_00045475-exon-sc0007976-1575043694:140..271TCONS_00045475-exon-sc0007976-1575043694:140..271Clytia hemisphaericaexon
TCONS_00045475-exon-sc0007976-1491911889:541..653TCONS_00045475-exon-sc0007976-1491911889:541..653Clytia hemisphaericaexon
TCONS_00045475-exon-sc0007976-1510915933:541..653TCONS_00045475-exon-sc0007976-1510915933:541..653Clytia hemisphaericaexon
TCONS_00045475-exon-sc0007976-1575043694:541..653TCONS_00045475-exon-sc0007976-1575043694:541..653Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007976supercontigsc0007976:140..653 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.456938	14.9299	16.4709	10.0601	6.8265	2.71999	6.11774	0	0	4.63412	0	8.15903	1.407	0.913098	9.93209	10.7261	26.5589	0	0	1.03827	0	2.25062e-05	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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