TCONS_00045392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045392
Unique NameTCONS_00045392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045392 ID=TCONS_00045392|Name=TCONS_00045392|organism=Clytia hemisphaerica|type=transcript|length=607bp
ATAATTCAGCTCGTGTACGACGAAAAGTTAAAACGGTGGATCGATAAAGA
TGCCGGTCCTGAAGATCTCCCAAAACCGCCCCCTCCTCCACCCACTGGCT
TATTAGGCCCCCAAAAGACGCCATCGGCCGCCACTCCCGCTAACTCATCC
ATGATGGTTCCGCCACAACCGACGGGTCCACCACAACCGATGGGTCCACC
AGCAGCTGGTCCACCAAAACCCATGCAAGTGGAACCTGCTCCGATGCTAC
CCACCATGAACATGATGCCCCCAGCACCGGTAGAAACGCGCCCGGAGCCC
GCTCAAGAGCCAGTTCCCGAAATGCCGGCCCCGTCACAAACTGAAGAGCC
AGCCGCCGTTTTACCACCCGAACCTGCGGGACAATCAATGCGTGGCTCCG
CTAAGCGTGCCGCACGGCGTACCTTGCTGCAACAAAGCAtggaaacaaaa
agaaaagagcaggaggagaaaaataaaaagactGGACCTCCAAGCATGTT
CTCTTTAAGGGCACAAGGTGGACGTAGAGGTACGtgtattaaaacatttt
taacatcAAATTGATAACATTTGAGATgtatactcttgtctcccgattAG
ACGGGGG
Run BLAST on NCBI

protein sequence of TCONS_00045392-protein

>TCONS_00045392-protein ID=TCONS_00045392-protein|Name=TCONS_00045392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
IIQLVYDEKLKRWIDKDAGPEDLPKPPPPPPTGLLGPQKTPSAATPANSS
MMVPPQPTGPPQPMGPPAAGPPKPMQVEPAPMLPTMNMMPPAPVETRPEP
AQEPVPEMPAPSQTEEPAAVLPPEPAGQSMRGSAKRAARRTLLQQSMETK
RKEQEEKNKKTGPPSMFSLRAQGGRRGTCIKTFLTSN
Run BLAST on NCBI

transcript from alignment at sc0007702:170..776

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045392 ID=TCONS_00045392|Name=TCONS_00045392|organism=Clytia hemisphaerica|type=transcript|length=607bp|location=Sequence derived from alignment at sc0007702:170..776 (Clytia hemisphaerica)
CCCCCGTCTaatcgggagacaagagtatacATCTCAAATGTTATCAATTT
gatgttaaaaatgttttaatacaCGTACCTCTACGTCCACCTTGTGCCCT
TAAAGAGAACATGCTTGGAGGTCCagtctttttatttttctcctcctgct
cttttctttttgtttccaTGCTTTGTTGCAGCAAGGTACGCCGTGCGGCA
CGCTTAGCGGAGCCACGCATTGATTGTCCCGCAGGTTCGGGTGGTAAAAC
GGCGGCTGGCTCTTCAGTTTGTGACGGGGCCGGCATTTCGGGAACTGGCT
CTTGAGCGGGCTCCGGGCGCGTTTCTACCGGTGCTGGGGGCATCATGTTC
ATGGTGGGTAGCATCGGAGCAGGTTCCACTTGCATGGGTTTTGGTGGACC
AGCTGCTGGTGGACCCATCGGTTGTGGTGGACCCGTCGGTTGTGGCGGAA
CCATCATGGATGAGTTAGCGGGAGTGGCGGCCGATGGCGTCTTTTGGGGG
CCTAATAAGCCAGTGGGTGGAGGAGGGGGCGGTTTTGGGAGATCTTCAGG
ACCGGCATCTTTATCGATCCACCGTTTTAACTTTTCGTCGTACACGAGCT
GAATTAT

Coding sequence (CDS) from alignment at sc0007702:170..776

>TCONS_00045392 ID=TCONS_00045392|Name=TCONS_00045392|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at sc0007702:170..776 (Clytia hemisphaerica)
TCAATTTgatgttaaaaatgttttaatacaCGTACCTCTACGTCCACCTT
GTGCCCTTAAAGAGAACATGCTTGGAGGTCCagtctttttatttttctcc
tcctgctcttttctttttgtttccaTGCTTTGTTGCAGCAAGGTACGCCG
TGCGGCACGCTTAGCGGAGCCACGCATTGATTGTCCCGCAGGTTCGGGTG
GTAAAACGGCGGCTGGCTCTTCAGTTTGTGACGGGGCCGGCATTTCGGGA
ACTGGCTCTTGAGCGGGCTCCGGGCGCGTTTCTACCGGTGCTGGGGGCAT
CATGTTCATGGTGGGTAGCATCGGAGCAGGTTCCACTTGCATGGGTTTTG
GTGGACCAGCTGCTGGTGGACCCATCGGTTGTGGTGGACCCGTCGGTTGT
GGCGGAACCATCATGGATGAGTTAGCGGGAGTGGCGGCCGATGGCGTCTT
TTGGGGGCCTAATAAGCCAGTGGGTGGAGGAGGGGGCGGTTTTGGGAGAT
CTTCAGGACCGGCATCTTTATCGATCCACCGTTTTAACTTTTCGTCGTAC
ACGAGCTGAATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028972XLOC_028972Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045392-exon-sc0007702-1491911889:170..776TCONS_00045392-exon-sc0007702-1491911889:170..776Clytia hemisphaericaexon
TCONS_00045392-exon-sc0007702-1510915933:170..776TCONS_00045392-exon-sc0007702-1510915933:170..776Clytia hemisphaericaexon
TCONS_00045392-exon-sc0007702-1575043694:170..776TCONS_00045392-exon-sc0007702-1575043694:170..776Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045392-proteinTCONS_00045392-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007702supercontigsc0007702:170..776 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
53.5732	46.2444	30.8843	25.4757	45.8001	37.7118	43.091	54.7182	21.9341	27.2619	13.2757	16.4446	15.1768	18.6549	11.3381	16.1329	22.7518	16.1182	10.9919	18.6416	30.8545	31.2765	30.3553	31.8717	20.5767	27.2474	13.0785	14.0881	39.7733	33.5673
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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