TCONS_00045265 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045265
Unique NameTCONS_00045265
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045265 ID=TCONS_00045265|Name=TCONS_00045265|organism=Clytia hemisphaerica|type=transcript|length=589bp
GGATGGCATCAGTGATGGTGGTGGGGGTGGCGAAAGCTGTGGTGATTTTT
GCATTGGCTGGGTTTCTTCTGGTGGTTGTTGGGTTGAAGCTGAAGCAGGT
GGCGGCGGTGACAGTGATAGAGGATCCGGGAGAACATCAGTTGGCAAGAA
GTGGACAGGGCTGGTACTGATTTTGTCTGTGTCCGTTGTTCGTTgaattc
ttttcttcttcaccTGACCGATCTTGTCTTCTGCATCAGTAAAGGTGACC
AAGGGAGCATCATGCGACAAGTCCATTTGGTTCAATCCCATCTTTTTCTT
CGTTGTTGTAAAACTGAGGTGGGATGGTATCGGTCGTCCTTTCATCAGCT
CTGTCACTTCTTCAACGCGCACCTTGTTTTTAAACCACTTGGATAATGTT
GTTTGGTTAACGTTGAAGAGGGTGATCGAGGTCTNCACCTTGTTTTTAAA
CCACTTGGATAATGTTGTTTGGTTAACGTTGAAGAGGGTGATCGAGGTCT
GTTCTTTCAGGGATTTGCTGTTGAAAACTCTGGCACGTAAGTTGTTGTAT
TCTTCCAAGATGAGCTTAAGACGGGAAGCAAACTTGGCC
Run BLAST on NCBI

protein sequence of TCONS_00045265-protein

>TCONS_00045265-protein ID=TCONS_00045265-protein|Name=TCONS_00045265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
AKFASRLKLILEEYNNLRARVFNSKSLKEQTSITLFNVNQTTLSKWFKNK
VXTSITLFNVNQTTLSKWFKNKVRVEEVTELMKGRPIPSHLSFTTTKKKM
GLNQMDLSHDAPLVTFTDAEDKIGQVKKKRIQRTTDTDKISTSPVHFLPT
DVLPDPLSLSPPPPASASTQQPPEETQPMQKSPQLSPPPPPSLMPS
Run BLAST on NCBI

transcript from alignment at sc0007347:388..976

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045265 ID=TCONS_00045265|Name=TCONS_00045265|organism=Clytia hemisphaerica|type=transcript|length=589bp|location=Sequence derived from alignment at sc0007347:388..976 (Clytia hemisphaerica)
GGCCAAGTTTGCTTCCCGTCTTAAGCTCATCTTGGAAGAATACAACAACT
TACGTGCCAGAGTTTTCAACAGCAAATCCCTGAAAGAACAGACCTCGATC
ACCCTCTTCAACGTTAACCAAACAACATTATCCAAGTGGTTTAAAAACAA
GGTGNAGACCTCGATCACCCTCTTCAACGTTAACCAAACAACATTATCCA
AGTGGTTTAAAAACAAGGTGCGCGTTGAAGAAGTGACAGAGCTGATGAAA
GGACGACCGATACCATCCCACCTCAGTTTTACAACAACGAAGAAAAAGAT
GGGATTGAACCAAATGGACTTGTCGCATGATGCTCCCTTGGTCACCTTTA
CTGATGCAGAAGACAAGATCGGTCAggtgaagaagaaaagaattcAACGA
ACAACGGACACAGACAAAATCAGTACCAGCCCTGTCCACTTCTTGCCAAC
TGATGTTCTCCCGGATCCTCTATCACTGTCACCGCCGCCACCTGCTTCAG
CTTCAACCCAACAACCACCAGAAGAAACCCAGCCAATGCAAAAATCACCA
CAGCTTTCGCCACCCCCACCACCATCACTGATGCCATCC

Coding sequence (CDS) from alignment at sc0007347:388..976

>TCONS_00045265 ID=TCONS_00045265|Name=TCONS_00045265|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at sc0007347:388..976 (Clytia hemisphaerica)
GCCAAGTTTGCTTCCCGTCTTAAGCTCATCTTGGAAGAATACAACAACTT
ACGTGCCAGAGTTTTCAACAGCAAATCCCTGAAAGAACAGACCTCGATCA
CCCTCTTCAACGTTAACCAAACAACATTATCCAAGTGGTTTAAAAACAAG
GTGNAGACCTCGATCACCCTCTTCAACGTTAACCAAACAACATTATCCAA
GTGGTTTAAAAACAAGGTGCGCGTTGAAGAAGTGACAGAGCTGATGAAAG
GACGACCGATACCATCCCACCTCAGTTTTACAACAACGAAGAAAAAGATG
GGATTGAACCAAATGGACTTGTCGCATGATGCTCCCTTGGTCACCTTTAC
TGATGCAGAAGACAAGATCGGTCAggtgaagaagaaaagaattcAACGAA
CAACGGACACAGACAAAATCAGTACCAGCCCTGTCCACTTCTTGCCAACT
GATGTTCTCCCGGATCCTCTATCACTGTCACCGCCGCCACCTGCTTCAGC
TTCAACCCAACAACCACCAGAAGAAACCCAGCCAATGCAAAAATCACCAC
AGCTTTCGCCACCCCCACCACCATCACTGATGCCATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028847XLOC_028847Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045265-exon-sc0007347-1491911889:388..976TCONS_00045265-exon-sc0007347-1491911889:388..976Clytia hemisphaericaexon
TCONS_00045265-exon-sc0007347-1510915933:388..976TCONS_00045265-exon-sc0007347-1510915933:388..976Clytia hemisphaericaexon
TCONS_00045265-exon-sc0007347-1575043694:388..976TCONS_00045265-exon-sc0007347-1575043694:388..976Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045265-proteinTCONS_00045265-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007347supercontigsc0007347:388..976 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.417484	0	0	0.303404	0.0224811	0.113989	0	0	0.0339492	0.389806	0.591933	0	0	0	0.301625	0.627615	0	0.253987	0.229578	0.132358	0	0	0	0.143819	0.120666	0.198171	0.00614625	0	0.20725	0.0846618
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00045265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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