TCONS_00044963 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044963
Unique NameTCONS_00044963
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044963 ID=TCONS_00044963|Name=TCONS_00044963|organism=Clytia hemisphaerica|type=transcript|length=364bp
AGAGGTGAATCTGGTGCTGGAAAGACAGAGAACACCAAGAAAGTCATCCA
ATATTTGACCTCTGTTGCTGGACGATCCAGCGCTGGTCCTGTAGATGCTG
ATGATAAGACGCAAGGAAAATTGGAGAATCAATTATTGCAAGCTAACCCC
ATCCTTGAAGCGTTTGGTAATGCTAAGACCGTCAAGAATGATAACTCGTC
CCGTTTCGGTAAATTCATTCGTGTTATGTTCGATAACTCTGGATTCATTT
GTGGAGCTAACATCGAATCATACTTGCTGGAGAAAGCTCGTCTCATTCGT
CAAGCACCTGAAGAAAGAATTTTCCACATCTTCTATCAATTGTGCTTGGG
AGCTAGCGATGATG
Run BLAST on NCBI

protein sequence of TCONS_00044963-protein

>TCONS_00044963-protein ID=TCONS_00044963-protein|Name=TCONS_00044963-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
RGESGAGKTENTKKVIQYLTSVAGRSSAGPVDADDKTQGKLENQLLQANP
ILEAFGNAKTVKNDNSSRFGKFIRVMFDNSGFICGANIESYLLEKARLIR
QAPEERIFHIFYQLCLGASDD
Run BLAST on NCBI

transcript from alignment at sc0006554:431..1692+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044963 ID=TCONS_00044963|Name=TCONS_00044963|organism=Clytia hemisphaerica|type=transcript|length=1262bp|location=Sequence derived from alignment at sc0006554:431..1692+ (Clytia hemisphaerica)
AGAGGTGAATCTGGTGCTGGAAAGACAGAGAACACCAAGAAAGTCATCCA
ATATTTGACCTCTGTTGCTGGACGATCCAGCGCTGGTCCTGTAGATGCTG
ATGATAAGACGCAAGGAAAATTGGAGAATCAATTATTGCAAGCTAACCCC
ATCCTTGAAGCGTTTGGTAATGCTAAGACCGTCAAGAATGATAACTCGTC
CCGTTTCGTAAGTGCCTTGTAATCTATCGTCACTCTTGTTAAAAGATCTG
AATGGTGTTATAGTGTTTgaacaatagaccttatcggagtttttgatttt
tctaaaaaagtgatgcattgtgggattgtttcgggtgtattacaatagaa
atctcttaggtaTTTCTCGAGGGAATTCTGTTGTAAttcactcgaaacaa
tcccacaatgcatcacttttttagaaaaatcaaaaactccgataaggtct
ataaTCTTAGTAAAGTTATTCTTCGGAAACGTATAGTCTACTTTTCTTTC
TTGTGCGAACTGTTccccagacggcacacaacgtcaaaacaacgtccatg
acattcataacgtccaaataacgttatttgaacgttaaaacaacgttgtg
tgccagctgggtcatTTGTATTTGGGGATAAGGGTCACTAAACATTACTG
GGCTGATTTTTCAATCACTTCTAAATCAAACTTTCACTTTCAACTTGTAG
CCAATTAAGCCTATTTTCAGCCATACGCAAAGAAACTGTACGTATTAAGA
GCATCTAACACGACAACTGCTGATGAGccctttttcagaaatcgaaaaAC
TCCCCTCTTGGAATTTCATCAATAGTTTGACTTTTAGAGAGGCTCTCCCG
TGGCCTTAATTTTGTAAGTTTTTGTAGCAAAAGTTACTGGTATTTTGACC
CCTCTATTATACTTAGAGTCGGCAGCGAGCATGTTGActgaaaaattcat
aaaatatatagggaaaattttctttcgcTTACACAGGGTACATCTGGATT
TAAACAATGAAACTGGTTGCAAACGCCCGGTGTTTTTCgcgtgtttccgt
ataaaagataacgtcatgaatatcaataATAATTTAATTTCCTTCTCACA
CACAGGGTAAATTCATTCGTGTTATGTTCGATAACTCTGGATTCATTTGT
GGAGCTAACATCGAATCATACTTGCTGGAGAAAGCTCGTCTCATTCGTCA
AGCACCTGAAGAAAGAATTTTCCACATCTTCTATCAATTGTGCTTGGGAG
CTAGCGATGATG

Coding sequence (CDS) from alignment at sc0006554:431..1692+

>TCONS_00044963 ID=TCONS_00044963|Name=TCONS_00044963|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at sc0006554:431..1692+ (Clytia hemisphaerica)
AGAGGTGAATCTGGTGCTGGAAAGACAGAGAACACCAAGAAAGTCATCCA
ATATTTGACCTCTGTTGCTGGACGATCCAGCGCTGGTCCTGTAGATGCTG
ATGATAAGACGCAAGGAAAATTGGAGAATCAATTATTGCAAGCTAACCCC
ATCCTTGAAGCGTTTGGTAATGCTAAGACCGTCAAGAATGATAACTCGTC
CCGTTTCGGTAAATTCATTCGTGTTATGTTCGATAACTCTGGATTCATTT
GTGGAGCTAACATCGAATCATACTTGCTGGAGAAAGCTCGTCTCATTCGT
CAAGCACCTGAAGAAAGAATTTTCCACATCTTCTATCAATTGTGCTTGGG
AGCTAGCGATGATAGAGGTGAATCTGGTGCTGGAAAGACAGAGAACACCA
AGAAAGTCATCCAATATTTGACCTCTGTTGCTGGACGATCCAGCGCTGGT
CCTGTAGATGCTGATGATAAGACGCAAGGAAAATTGGAGAATCAATTATT
GCAAGCTAACCCCATCCTTGAAGCGTTTGGTAATGCTAAGACCGTCAAGA
ATGATAACTCGTCCCGTTTCGGTAAATTCATTCGTGTTATGTTCGATAAC
TCTGGATTCATTTGTGGAGCTAACATCGAATCATACTTGCTGGAGAAAGC
TCGTCTCATTCGTCAAGCACCTGAAGAAAGAATTTTCCACATCTTCTATC
AATTGTGCTTGGGAGCTAGCGATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028554XLOC_028554Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044963-proteinTCONS_00044963-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044963-exon-sc0006554-1491911889:431..637TCONS_00044963-exon-sc0006554-1491911889:431..637Clytia hemisphaericaexon
TCONS_00044963-exon-sc0006554-1510915933:431..637TCONS_00044963-exon-sc0006554-1510915933:431..637Clytia hemisphaericaexon
TCONS_00044963-exon-sc0006554-1575043694:431..637TCONS_00044963-exon-sc0006554-1575043694:431..637Clytia hemisphaericaexon
TCONS_00044963-exon-sc0006554-1491911889:1536..1692TCONS_00044963-exon-sc0006554-1491911889:1536..1692Clytia hemisphaericaexon
TCONS_00044963-exon-sc0006554-1510915933:1536..1692TCONS_00044963-exon-sc0006554-1510915933:1536..1692Clytia hemisphaericaexon
TCONS_00044963-exon-sc0006554-1575043694:1536..1692TCONS_00044963-exon-sc0006554-1575043694:1536..1692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006554supercontigsc0006554:431..1692 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	54.6275	74.4884	0	0	0	0	109.688	86.7982	0.0619054	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001609Myosin_head_motor_dom
IPR027417P-loop_NTPase
Vocabulary: Cellular Component
TermDefinition
GO:0016459myosin complex
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003774motor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016459 myosin complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0003774 motor activity
Blast
[Close]
BLAST of TCONS_00044963 vs. Swiss-Prot (Human)
Match: MYH9 (Myosin-9 OS=Homo sapiens GN=MYH9 PE=1 SV=4)

HSP 1 Score: 171.4 bits (433), Expect = 2.331e-49
Identity = 86/119 (72.27%), Postives = 94/119 (78.99%), Query Frame = 1 
Query:    4 GESGAGKTENTKKVIQYLTSVAGRSSAGPVDADDKTQGKLENQLLQANPILEAFGNAKTVKNDNSSRFGKFIRVMFDNSGFICGANIESYLLEKARLIRQAPEERIFHIFYQLCLGASD 360
            GESGAGKTENTKKVIQYL  VA    +       K QG+LE QLLQANPILEAFGNAKTVKNDNSSRFGKFIR+ FD +G+I GANIE+YLLEK+R IRQA EER FHIFY L  GA +
Sbjct:  174 GESGAGKTENTKKVIQYLAYVASSHKSK------KDQGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVNGYIVGANIETYLLEKSRAIRQAKEERTFHIFYYLLSGAGE 286
The following BLAST results are available for this feature:
BLAST of TCONS_00044963 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MYH92.331e-4972.27Myosin-9 OS=Homo sapiens GN=MYH9 PE=1 SV=4[more]
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