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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044896 ID=TCONS_00044896|Name=TCONS_00044896|organism=Clytia hemisphaerica|type=transcript|length=963bp
cTCACGTGTTTGGTATATAAGAAGGTAGAGGTGTAGGTATTAGGGAAAGG
TTTTGTTTGTACAAGGTTTTTATTATATATATGTATATAAGTTTCAAAGT
GCAgattttccttcgcacaagtttctaggaaCGGATTTCCcctcgcacaa
gtttctaggtacgGATTTCCCTTCacacaagtttctaggtacggattttc
cttcgcacaagtttctaggtgcggattttccttcgcacaagtttctaggt
gcggattttccttcacacaagtttctaggtgcggatttcccttcgcacaa
gtttctataTAGGTacggatttcccttcgcacaagtttccaGGTACGGAT
TTCCCTTTGCACAAGTTTTTAAGTacggatttcccttcgcacaagaTTTG
TTTGTAATCAATGTATTATTTGTTTGTTCAATAGTGTATACTTTGTTTCA
ATAGCTTTGCTTTGGTGCAGATTTTAGCACTAAGTTGCGGATATTTAATC
CGCAGATCCTGCTTTGACACAGGGAAGACCTTCACTATAGAAAATAGCTA
AGAATCTTTGAATGACTGCTTGTTCTAAAAAGAACACAGCAAATCAAGTA
TGTTATATGatatgtaaagtttttttgctttacacgacgaaaatgttgaa
aaacacTAGATACACTGTCTCAATGTGAAACTTGCTGCTAGCCTTCTACT
GTAAAGAGAAAAGAGTGAGCTCGAAAAGGATTCGGAAATTACCTATAATG
CAACAGCTTACTATCTTGATAGCCCAGATAATTTCATTCCCCAAACATCC
AGCCAGTTTCTCTACCAagccaacaaacaacaaaccaGTTTCTAGTGGTT
TCTATCCTTTTTCCACTGTGAGACTAGGAAACACAGCACTGCGAGCGCAT
TTTCTTAAAGTGTCAGCCAGGTTGGCCGAAAAACGGTAattttcaagcac
ttattaatTCAAG Run BLAST on NCBI transcript from alignment at sc0006410:390..1497- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044896 ID=TCONS_00044896|Name=TCONS_00044896|organism=Clytia hemisphaerica|type=transcript|length=1108bp|location=Sequence derived from alignment at sc0006410:390..1497- (Clytia hemisphaerica)
CTCACGTGTTTGGTATATAAGAAGGTAGAGGTGTAGGTATTAGGGAAAGG
TTTTGTTTGTACAAGGTTTTTATTATATATATGTATATAAGTTTCAAAGT
GCAGATTTTCCTTCGCACAAGTTTCTAGGAACGGATTTCCCCTCGCACAA
GTTTCTAGGTACGGATTTCCCTTCACACAAGTTTCTAGGTACGGATTTTC
CTTCGCACAAGTTTCTAGGTGCGGATTTTCCTTCGCACAAGTTTCTAGGT
GCGGATTTTCCTTCACACAAGTTTCTAGGTGCGGATTTCCCTTCGCACAA
GTTTCTATATAGGTACGGATTTCCCTTCGCACAAGTTTCCAGGTACGGAT
TTCCCTTTGCACAAGTTTTTAAGTACGGATTTCCCTTCGCACAAGATTTG
TTTGTAATCAATGTATTATTTGTTTGTTCAATAGTGTATACTTTGTTTCA
ATAGCTTTGCTTTGGTGCAGATTTTAGCACTAAGTTGCGGATATTTAATC
CGCAGATCCTGCTTTGACACAGGGAAGACCTTCACTATAGAAAATAGCTA
AGAATCTTTGAATGACTGCTTGTTCTAAAAAGAACACAGCAAATCAAGTA
TGTTATATGATATGTAAAGTTTTTTTGCTTTACACGACGAAAATGTTGAA
AAACACTAGATACACTGTCTCAATGTGAAACTTGCTGCTAGCCTTCTACT
GTAAAGAGAAAAGAGTGAGCTCGAAAAGGATTCGGAAATTACCTATAATG
CAACAGCTTACTATCTTGATAGCCCAGATAATTTCATTCCCCAAACATCC
AGCCAGTTTCTCATCTACTGACTACCAAGCCAACANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCGGGCCACTTATCAGCGCCAAAAAGTCCATAAA
AAAGCTCTAAGTGGACCCCGGGCTACCAAACATCCAGCCAGTTTCTCATC
TACTGACTACCAAGCCAACAAACAACAAACCAGTTTCTAGTGGTTTCTAT
CCTTTTTCCACTGTGAGACTAGGAAACACAGCACTGCGAGCGCATTTTCT
TAAAGTGTCAGCCAGGTTGGCCGAAAAACGGTAATTTTCAAGCACTTATT
AATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044896-exon-sc0006410-1575043694:686..1497 | TCONS_00044896-exon-sc0006410-1575043694:686..1497 | Clytia hemisphaerica | exon |
| TCONS_00044896-exon-sc0006410-1575043694:390..540 | TCONS_00044896-exon-sc0006410-1575043694:390..540 | Clytia hemisphaerica | exon |
| TCONS_00044896-exon-sc0006410-1510915933:686..1497 | TCONS_00044896-exon-sc0006410-1510915933:686..1497 | Clytia hemisphaerica | exon |
| TCONS_00044896-exon-sc0006410-1510915933:390..540 | TCONS_00044896-exon-sc0006410-1510915933:390..540 | Clytia hemisphaerica | exon |
| TCONS_00044896-exon-sc0006410-1491911889:686..1497 | TCONS_00044896-exon-sc0006410-1491911889:686..1497 | Clytia hemisphaerica | exon |
| TCONS_00044896-exon-sc0006410-1491911889:390..540 | TCONS_00044896-exon-sc0006410-1491911889:390..540 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006410 | supercontig | sc0006410:390..1497 - |
Blast
The following BLAST results are available for this feature:
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