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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044808 ID=TCONS_00044808|Name=TCONS_00044808|organism=Clytia hemisphaerica|type=transcript|length=510bp
TACAGAATATGCAAGTAGAAATTGAAGAGGCAGGATTTCGTGAAGATTTT
GGAACAGCTGGACCTATTATAAAAACCAAGAAAGGTGGTGTGACTGAGAA
CTCCAGATATTCTAGATTCGTTCCCGGCAAGCCTTGGGTCATTTTCGAAG
CATTTCAAATCTTACtgaaagaacaagttaagaaattGATCGAAATCGGA
GTTGATCCAAATATTGATTATGTTGTCCACCAATTATGGATTCATTTTCT
TCGAGTCAACAGAATAGCTTTCCATCCCAATGAACGAGAAACTGTTGATC
TTCGCAAGTCAAAACACACCGGAAGATCGCATAAAATTTCCAAGTTCAGT
TTCCTGGGTAAAAGAAAAACAGAGCGAAAGTTAGGCCGCACTTTATTAGA
CGACGAAGCAGATGAACATGAATCCGATTTTGAATCCGATTTTGAAGATG
ATGATCCGATGGACGAAAAATCGGATAAAACAGAGGAGAATTGTAATCCT
GATGGTGAAG Run BLAST on NCBI protein sequence of TCONS_00044808-protein >TCONS_00044808-protein ID=TCONS_00044808-protein|Name=TCONS_00044808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
QNMQVEIEEAGFREDFGTAGPIIKTKKGGVTENSRYSRFVPGKPWVIFEA
FQILLKEQVKKLIEIGVDPNIDYVVHQLWIHFLRVNRIAFHPNERETVDL
RKSKHTGRSHKISKFSFLGKRKTERKLGRTLLDDEADEHESDFESDFEDD
DPMDEKSDKTEENCNPDGE Run BLAST on NCBI transcript from alignment at sc0006247:1..1959- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044808 ID=TCONS_00044808|Name=TCONS_00044808|organism=Clytia hemisphaerica|type=transcript|length=1959bp|location=Sequence derived from alignment at sc0006247:1..1959- (Clytia hemisphaerica)
TACAGAATATGCAAGTAGAAATTGAAGAGGCAGGATTTCGTGAAGATTTT
GGAACAGCTGGACCTATTATAAAAACCAAGAAAGGTGGTGTGACTGAGAA
CTCCAGATATTCTAGTAAGTCTAGATCTTCTATATAATTTCCATATGATT
GTTAATATTGCGGTGTTGATAGATTATAGTTAAGAAATACAATACAATTA
GTCTGGCTGTAATTTATACTATATCACATCAAAAGGCAAAACTGAGAAAC
TGTATATACACCTTTTCGACCGTAGCCGCCAAGTCCTTTTTTGACATGAC
ACATTTTTCTATTGTCTATAGGTGCGAAAAAAGGACTGGGACGGTTTTAG
TGGGATAAAAATGCCCACGCGGCAATTGGCGGCTACGGTCAAAAAGGTGT
ATTACTAGGGCCAGAACATTGACATATTTCAGGGTGCTGGTCTAAGAGTT
TCTTTCAAGTCGTGTGTTTTCTCGTTTCTTGTATATGTGCTATTTGAGCT
GGTCTACGACGTCTTCTTGATTAGGATTCGTTCCCGGCAAGCCTTGGGTC
ATTTTCGAAGCATTTCAAATCTTACTGAAAGAACAAGTTAAGAAATTGAT
CGAAATCGGAGTTGATCCAAATATTGATGTAAGTATGACATCTTCCCATT
TTCCTCTATATATTGTATTGAAATACTTTTTTGCATCCAATCTTTGCAGA
GGATATCATATTTGAAGATAAAAGACACGTATCCACGATTTAAGATCATG
CTAAGACGTTACGGTCCCGTTCCGTTTCGAAACGAAATGGTTCCGTAACA
AGTGTGAACATCAAAATTCGAAACGTCAAAAAATGATGTTACAAAGATGT
TACAAAGCAAAACAGATCGAAACGGTTATTTCGCTTCACTTTTTTCATTG
GAACGGAACTGCCCCGTTTTCTCGCTCCGAAACGTTCCGAAACAATTATG
AAAATATTCGTTCCGTAACGAAAATCATACCGGAGCGAAACGGAACGGTG
ACGCGTGTCCACGACTTGGTTTCCTATCTTTTACACGACTTGATACTTCA
GAGCACTGAAGTCTTGCTACAAATTACTACCTTACTGGAACAAATTTTTG
TGGGAATTAATTTTGGCGTTTTTCGCGGTTTTTCGGCAAAACCGCAAAAA
TTTAAACCCGCGAAATACAATTTTTCCAATGTTATCGAAAAATTTGAAAT
ATTTCCTCTTTTAGTATGTTGTCCACCAATTATGGATTCATTTTCTTCGA
GTCAACAGAATAGCTTTCCATCCCAATGAACGAGAAACTGTTGATCTTCG
CAAGTCAAAACACACCGGAAGATCGCATAAAATTTCCAAGTTCAGTTTCC
TGGGTAAAAGAAAAACAGAGCGAAAGTTAGGCCGCACTTTATTAGGTTTG
TGATGTGTCCATTTTATTCTTTCAATTTTTCTCAATTTCTTTTCTCAGGA
CAGAATTCACTATCCTAGGTTAAGGGACATCACTGCGTTTATCTGACTCT
GCCGACTCTGGTTCGCGTGTTTAAAGCCTGTTTAAAAAGCGAATTTTAAC
TTAAAAAGCTTGTATAACTTAAAAAGCTTATATAACTTGACCAAAGTCAA
AAAAAAAATCTACACCTTAAGATTTAAATCTAAGAAAAGTTTGAAAATCT
CTCATGGATCAAAACACTACCCTCAACATAATACCAACAAATATGATACA
AAATTTCTATTCTAAGTTAGACTATCCTCTAATCTGAAAAAAAAACATAA
CAAGTTTTTTTGAACTATCTATTTGAACTATTATTTCAAACATTGTTTAA
ATTAACGGCCCAAAAAGGAAATTCCTATTTTCCCGATCATTTTTTCAGAC
GACGAAGCAGATGAACATGAATCCGATTTTGAATCCGATTTTGAAGATGA
TGATCCGATGGACGAAAAATCGGATAAAACAGAGGAGAATTGTAATCCTG
ATGGTGAAG Coding sequence (CDS) from alignment at sc0006247:1..1959- >TCONS_00044808 ID=TCONS_00044808|Name=TCONS_00044808|organism=Clytia hemisphaerica|type=CDS|length=2028bp|location=Sequence derived from alignment at sc0006247:1..1959- (Clytia hemisphaerica)
ACGACGAAGCAGATGAACATGAATCCGATTTTGAATCCGATTTTGAAGAT
GATGATCCGATGGACGAAAAATCGGATAAAACAGAGGAGAATTGTAATCC
TGATGGTGAATATGTTGTCCACCAATTATGGATTCATTTTCTTCGAGTCA
ACAGAATAGCTTTCCATCCCAATGAACGAGAAACTGTTGATCTTCGCAAG
TCAAAACACACCGGAAGATCGCATAAAATTTCCAAGTTCAGTTTCCTGGG
TAAAAGAAAAACAGAGCGAAAGTTAGGCCGCACTTTATTAGGATTCGTTC
CCGGCAAGCCTTGGGTCATTTTCGAAGCATTTCAAATCTTACTGAAAGAA
CAAGTTAAGAAATTGATCGAAATCGGAGTTGATCCAAATATTGATCAGAA
TATGCAAGTAGAAATTGAAGAGGCAGGATTTCGTGAAGATTTTGGAACAG
CTGGACCTATTATAAAAACCAAGAAAGGTGGTGTGACTGAGAACTCCAGA
TATTCTAACGACGAAGCAGATGAACATGAATCCGATTTTGAATCCGATTT
TGAAGATGATGATCCGATGGACGAAAAATCGGATAAAACAGAGGAGAATT
GTAATCCTGATGGTGAATATGTTGTCCACCAATTATGGATTCATTTTCTT
CGAGTCAACAGAATAGCTTTCCATCCCAATGAACGAGAAACTGTTGATCT
TCGCAAGTCAAAACACACCGGAAGATCGCATAAAATTTCCAAGTTCAGTT
TCCTGGGTAAAAGAAAAACAGAGCGAAAGTTAGGCCGCACTTTATTAGGA
TTCGTTCCCGGCAAGCCTTGGGTCATTTTCGAAGCATTTCAAATCTTACT
GAAAGAACAAGTTAAGAAATTGATCGAAATCGGAGTTGATCCAAATATTG
ATCAGAATATGCAAGTAGAAATTGAAGAGGCAGGATTTCGTGAAGATTTT
GGAACAGCTGGACCTATTATAAAAACCAAGAAAGGTGGTGTGACTGAGAA
CTCCAGATATTCTAACGACGAAGCAGATGAACATGAATCCGATTTTGAAT
CCGATTTTGAAGATGATGATCCGATGGACGAAAAATCGGATAAAACAGAG
GAGAATTGTAATCCTGATGGTGAATATGTTGTCCACCAATTATGGATTCA
TTTTCTTCGAGTCAACAGAATAGCTTTCCATCCCAATGAACGAGAAACTG
TTGATCTTCGCAAGTCAAAACACACCGGAAGATCGCATAAAATTTCCAAG
TTCAGTTTCCTGGGTAAAAGAAAAACAGAGCGAAAGTTAGGCCGCACTTT
ATTAGGATTCGTTCCCGGCAAGCCTTGGGTCATTTTCGAAGCATTTCAAA
TCTTACTGAAAGAACAAGTTAAGAAATTGATCGAAATCGGAGTTGATCCA
AATATTGATCAGAATATGCAAGTAGAAATTGAAGAGGCAGGATTTCGTGA
AGATTTTGGAACAGCTGGACCTATTATAAAAACCAAGAAAGGTGGTGTGA
CTGAGAACTCCAGATATTCTAACGACGAAGCAGATGAACATGAATCCGAT
TTTGAATCCGATTTTGAAGATGATGATCCGATGGACGAAAAATCGGATAA
AACAGAGGAGAATTGTAATCCTGATGGTGAATATGTTGTCCACCAATTAT
GGATTCATTTTCTTCGAGTCAACAGAATAGCTTTCCATCCCAATGAACGA
GAAACTGTTGATCTTCGCAAGTCAAAACACACCGGAAGATCGCATAAAAT
TTCCAAGTTCAGTTTCCTGGGTAAAAGAAAAACAGAGCGAAAGTTAGGCC
GCACTTTATTAGGATTCGTTCCCGGCAAGCCTTGGGTCATTTTCGAAGCA
TTTCAAATCTTACTGAAAGAACAAGTTAAGAAATTGATCGAAATCGGAGT
TGATCCAAATATTGATCAGAATATGCAAGTAGAAATTGAAGAGGCAGGAT
TTCGTGAAGATTTTGGAACAGCTGGACCTATTATAAAAACCAAGAAAGGT
GGTGTGACTGAGAACTCCAGATATTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044808-exon-sc0006247-1575043694:1846..1959 | TCONS_00044808-exon-sc0006247-1575043694:1846..1959 | Clytia hemisphaerica | exon |
| TCONS_00044808-exon-sc0006247-1575043694:1332..1435 | TCONS_00044808-exon-sc0006247-1575043694:1332..1435 | Clytia hemisphaerica | exon |
| TCONS_00044808-exon-sc0006247-1575043694:565..745 | TCONS_00044808-exon-sc0006247-1575043694:565..745 | Clytia hemisphaerica | exon |
| TCONS_00044808-exon-sc0006247-1575043694:1..111 | TCONS_00044808-exon-sc0006247-1575043694:1..111 | Clytia hemisphaerica | exon |
| TCONS_00044808-exon-sc0006247-1510915933:1846..1959 | TCONS_00044808-exon-sc0006247-1510915933:1846..1959 | Clytia hemisphaerica | exon |
| TCONS_00044808-exon-sc0006247-1510915933:1332..1435 | TCONS_00044808-exon-sc0006247-1510915933:1332..1435 | Clytia hemisphaerica | exon |
| TCONS_00044808-exon-sc0006247-1510915933:565..745 | TCONS_00044808-exon-sc0006247-1510915933:565..745 | Clytia hemisphaerica | exon |
| TCONS_00044808-exon-sc0006247-1510915933:1..111 | TCONS_00044808-exon-sc0006247-1510915933:1..111 | Clytia hemisphaerica | exon |
| TCONS_00044808-exon-sc0006247-1491911889:1846..1959 | TCONS_00044808-exon-sc0006247-1491911889:1846..1959 | Clytia hemisphaerica | exon |
| TCONS_00044808-exon-sc0006247-1491911889:1332..1435 | TCONS_00044808-exon-sc0006247-1491911889:1332..1435 | Clytia hemisphaerica | exon |
| TCONS_00044808-exon-sc0006247-1491911889:565..745 | TCONS_00044808-exon-sc0006247-1491911889:565..745 | Clytia hemisphaerica | exon |
| TCONS_00044808-exon-sc0006247-1491911889:1..111 | TCONS_00044808-exon-sc0006247-1491911889:1..111 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006247 | supercontig | sc0006247:1..1959 - |
Blast
The following BLAST results are available for this feature:
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