TCONS_00044773 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044773
Unique NameTCONS_00044773
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044773 ID=TCONS_00044773|Name=TCONS_00044773|organism=Clytia hemisphaerica|type=transcript|length=392bp
TTAAGGGGATCGCTTGATAACCATTAATGGACGTAACGTAGAAAATTCCA
CACGACAACAGtGTACCAGCATGTTGAAGTTATCTCAAGATATTGTTGTC
CTTCATTTGGAACGATGTGTCGTTGGTGATGATCTACCCCCTCTAGATAC
TGTGTTGACGGTAGTAGAGTTGATGAAGGATGGAACTGGTTTCGGAATGA
GTTTAACGGGTGGACCAGAAATTGGTGGCATCTTTGTTAAAGCATTAATG
CCAGAAGGAGTAGCTGAGAAAGATGGACGTGTTAACATCGGTAAGCTGTC
AATGTAAATAGACCTTtacataaattacgtcacaaacaatACTTACCTCT
TCTTCAAAGTATTGCTATGGTGATTGATTACCAGAGGAGTTA
Run BLAST on NCBI

transcript from alignment at sc0006189:101..1866-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044773 ID=TCONS_00044773|Name=TCONS_00044773|organism=Clytia hemisphaerica|type=transcript|length=1766bp|location=Sequence derived from alignment at sc0006189:101..1866- (Clytia hemisphaerica)
TTAAGGGGATCGCTTGATAACCATTAATGGACGTAACGTAGAAAATTCCA
CACGACAACAGGTACCTGGGGACTGTTACCTTATCTTGTTAGGTTATCTA
ATAAGGGGCTGTAACAGTTTCTATCTAGACAGGAACTGTTGATGAATTTT
TCGAGACATTTTTTGTTTCAAAAATCGATTTGTTTATAATTTCTTTTCAT
CTTTTGAGGTGGGGCATATAGCAACTTTTTCATCAAAATGAAACTTTTTG
CGTGTTTTAGCGATGGCTAAGTGATCAAAGGCGATAGCGTCACAAACCAG
GGTTTCGTGATTCGAACCCCACTACTGTTCTGTTCTGTTAATGAACAACC
CAGCCGGCTAGCCCTGCCCTAGAGGACCCCATGAAAAATATCAAAAAGAA
TGTCTACAAATCTTAGATTACTGAGCTATCCACATATTTTGAAGATCTGT
TGACCTCTATGAAACAGAACTTTTGATTGTACATTTTATAAAGTTTTTCT
TCCCATTCTTTTATCAAACACACTTTGAAGACCTGTAAAGGATGCTGCTT
CAAGAACATCTTCTTCTAGATCATTCCAGGGTTTTATAAAGGGATTTCCA
TATGCCCAAAAATCGCCATTTTCGCCCGCTGGAAAGCCTGGACCGGCCCA
GGACCGGGCCACCGGGGGTAAAAAAGGGCTGGTTTTTGTTACGGAAATTT
CATTTGTTTATTTTGCAGTGTACCAGCATGTTGAAGTTATCTCAAGATAT
TGTTGTCCTTCATTTGGAACGATGTGTCGTTGGTGATGATCTACCCCCTC
TAGATACTGTATGTAAATTCTGTACAAACTCATTCTCATCCAGTGCAGCT
GCTAGAATTTCGCAATGTCTGACCTGCGAAGTAGTAAGTCTGTGACCGCA
GTCGGAGGTGACCCGAATGTTCCTCTTTCGATAGCTATCTACCTGAAGGT
AGGGGGGGGCACCACTCTTTCTCCCTGGATTTCTCCACTTACCCTTGATC
CTTCTCTTAATTGCTGAGCATCAAGTAGAGAGGCATCAAGTACCATTTTG
GAAATCTTTGGTATGACCCAGCTGGAGGTTGAACCCACAACCTTGCGAAC
CGTAGCAGGATGCTCTACCACTTCACTACGGTCGCTACAATGTCTGGCCT
AACTTTTTGTCAGACTGTCTGAAAATAAGTCAGGGTGAACCTACCACTCT
TGGCCAAATGTATTCCTTCAATTTATTGGTGACGGAATTTTTGACCACCC
AATTATGTACAATGTTTAGATATGCTTTTGATATAGTTGCACCCCCCAAT
TTACTTCTTACAGGTGTTGACGGTAGTAGAGTTGATGAAGGATGGAACTG
GTTTCGGAATGAGTTTAACGGTAAGCTTTTAATCAAAAGGCTGTATTTGA
TAGAAAAAAATATCGAAAAAAGTGTTTACATACGCTATAAACCGACTTTG
TGCCTTGCATACTCTTTGCGAATCGACTTTAAAAACCGCGGGGTTGAAAT
CTCAAATCTCACATCTCTTATAATCTACACAACACCATTTATTTCCTCCA
CATAATTACAATCCAAACATCGGCTTTTTAAGGGTGGACCAGAAATTGGT
GGCATCTTTGTTAAAGCATTAATGCCAGAAGGAGTAGCTGAGAAAGATGG
ACGTGTTAACATCGGTAAGCTGTCAATGTAAATAGACCTTTACATAAATT
ACGTCACAAACAATACTTACCTCTTCTTCAAAGTATTGCTATGGTGATTG
ATTACCAGAGGAGTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028385XLOC_028385Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044773-exon-sc0006189-1575043694:1806..1866TCONS_00044773-exon-sc0006189-1575043694:1806..1866Clytia hemisphaericaexon
TCONS_00044773-exon-sc0006189-1575043694:1059..1148TCONS_00044773-exon-sc0006189-1575043694:1059..1148Clytia hemisphaericaexon
TCONS_00044773-exon-sc0006189-1575043694:497..553TCONS_00044773-exon-sc0006189-1575043694:497..553Clytia hemisphaericaexon
TCONS_00044773-exon-sc0006189-1575043694:101..284TCONS_00044773-exon-sc0006189-1575043694:101..284Clytia hemisphaericaexon
TCONS_00044773-exon-sc0006189-1510915933:1806..1866TCONS_00044773-exon-sc0006189-1510915933:1806..1866Clytia hemisphaericaexon
TCONS_00044773-exon-sc0006189-1510915933:1059..1148TCONS_00044773-exon-sc0006189-1510915933:1059..1148Clytia hemisphaericaexon
TCONS_00044773-exon-sc0006189-1510915933:497..553TCONS_00044773-exon-sc0006189-1510915933:497..553Clytia hemisphaericaexon
TCONS_00044773-exon-sc0006189-1510915933:101..284TCONS_00044773-exon-sc0006189-1510915933:101..284Clytia hemisphaericaexon
TCONS_00044773-exon-sc0006189-1491911889:1806..1866TCONS_00044773-exon-sc0006189-1491911889:1806..1866Clytia hemisphaericaexon
TCONS_00044773-exon-sc0006189-1491911889:1059..1148TCONS_00044773-exon-sc0006189-1491911889:1059..1148Clytia hemisphaericaexon
TCONS_00044773-exon-sc0006189-1491911889:497..553TCONS_00044773-exon-sc0006189-1491911889:497..553Clytia hemisphaericaexon
TCONS_00044773-exon-sc0006189-1491911889:101..284TCONS_00044773-exon-sc0006189-1491911889:101..284Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006189supercontigsc0006189:101..1866 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.581602	0.189051	0.439013	0.429506	1.83009	1.44616	14.4563	18.6674	12.3382	11.9391	11.5884	6.58485	7.81445	7.76622	4.51346	4.48922	9.31428	6.56345	9.68601	14.998	9.93443	11.7942	3.67039	6.98548	8.95032	10.9602	2.39248	1.41851	1.17849	0.657696
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044773 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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