TCONS_00044578 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044578
Unique NameTCONS_00044578
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044578 ID=TCONS_00044578|Name=TCONS_00044578|organism=Clytia hemisphaerica|type=transcript|length=276bp
TAATTGTAAGATGTTATAATATAATATTAAGagatgacaaaatattttca
acagaTGAATCACAAATCAAAGCAACAAACGACTCCGAAAAGAACTGACA
GATCAGATTTCCTCTGGGTGAGGATGGTTCaaacaattttcataaaattc
caaagttaaaaaacttttccaaaCCGCGCACTTATGCACTAGCGcatcat
caaaaaatcaaaatcaaacttgcaaaattgaaaatcgcCTCAAGCTTGCA
GCAAAacgtaaaacaaaaaatacttt
Run BLAST on NCBI

transcript from alignment at sc0005821:1284..1559

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044578 ID=TCONS_00044578|Name=TCONS_00044578|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at sc0005821:1284..1559 (Clytia hemisphaerica)
aaagtattttttgttttacgtTTTGCTGCAAGCTTGAGgcgattttcaat
tttgcaagtttgattttgattttttgatgatgCGCTAGTGCATAAGTGCG
CGGtttggaaaagttttttaactttggaattttatgaaaattgtttGAAC
CATCCTCACCCAGAGGAAATCTGATCTGTCAGTTCTTTTCGGAGTCGTTT
GTTGCTTTGATTTGTGATTCAtctgttgaaaatattttgtcatctCTTAA
TATTATATTATAACATCTTACAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028197XLOC_028197Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044578-exon-sc0005821-1491911889:1284..1559TCONS_00044578-exon-sc0005821-1491911889:1284..1559Clytia hemisphaericaexon
TCONS_00044578-exon-sc0005821-1510915933:1284..1559TCONS_00044578-exon-sc0005821-1510915933:1284..1559Clytia hemisphaericaexon
TCONS_00044578-exon-sc0005821-1575043694:1284..1559TCONS_00044578-exon-sc0005821-1575043694:1284..1559Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005821supercontigsc0005821:1284..1559 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.42405	6.46171	7.08466	2.31041	0	1.11132	0.670379	0	0.439398	0	0	0.347269	0	0.360141	0.888254	0.635488	2.34861	0	0	0.580025	1.51244	0.737716	0.59786	0	0	0	0	0.763049	5.95072	8.06368
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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