TCONS_00044354 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044354
Unique NameTCONS_00044354
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044354 ID=TCONS_00044354|Name=TCONS_00044354|organism=Clytia hemisphaerica|type=transcript|length=421bp
ATTATTTACTTTATCATCAATAGTAGCAAAATTAAGTTGTATTATCTTTT
TTATCAATGTAAATACtatgttacaaaaaaaaatagtatTGAGATTCTTA
ANTGCGAATATTTTTAGTTTAGAGATTATTTACTTTATCATCAATAGTAG
CAAAATTAAGTTGTATTATCTTTTTTATCAATGTAAATACtatgttacaa
aaaaaattagtattGAGATTCTTTATAACAGATTATGCTATGGGTCCTCA
TCCGAATTTTATTGTTAAGAATTTGAGTCGTGCAACATTACGGTCCTTCT
TTCACCCGTGTTAATATATTGTCACATTTATCCTTTAAAAACAGGGCCga
tcgaaaattatttttggccaTGCATTAAAAGAATGATCAATTataacaaa
ttaaatttaacAAGATGACAg
Run BLAST on NCBI

transcript from alignment at sc0005437:998..1418

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044354 ID=TCONS_00044354|Name=TCONS_00044354|organism=Clytia hemisphaerica|type=transcript|length=421bp|location=Sequence derived from alignment at sc0005437:998..1418 (Clytia hemisphaerica)
cTGTCATCTTgttaaatttaatttgttatAATTGATCATTCTTTTAATGC
AtggccaaaaataattttcgatcGGCCCTGTTTTTAAAGGATAAATGTGA
CAATATATTAACACGGGTGAAAGAAGGACCGTAATGTTGCACGACTCAAA
TTCTTAACAATAAAATTCGGATGAGGACCCATAGCATAATCTGTTATAAA
GAATCTCaatactaattttttttgtaacataGTATTTACATTGATAAAAA
AGATAATACAACTTAATTTTGCTACTATTGATGATAAAGTAAATAATCTC
TAAACTAAAAATATTCGCANTTAAGAATCTCAatactatttttttttgta
acataGTATTTACATTGATAAAAAAGATAATACAACTTAATTTTGCTACT
ATTGATGATAAAGTAAATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027987XLOC_027987Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044354-exon-sc0005437-1491911889:998..1418TCONS_00044354-exon-sc0005437-1491911889:998..1418Clytia hemisphaericaexon
TCONS_00044354-exon-sc0005437-1510915933:998..1418TCONS_00044354-exon-sc0005437-1510915933:998..1418Clytia hemisphaericaexon
TCONS_00044354-exon-sc0005437-1575043694:998..1418TCONS_00044354-exon-sc0005437-1575043694:998..1418Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005437supercontigsc0005437:998..1418 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.370753	4.51356	1.62494	3.17015	2.41707	1.02021	0.524031	0.508637	0.780169	0.445191	0.115584	0	0	0	0.146628	0	0.186154	0.647206	0.236763	0	0.174445	0.359348	0	0.229467	0.261253	0	0.378486
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044354 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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