TCONS_00044205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044205
Unique NameTCONS_00044205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length631

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044205 ID=TCONS_00044205|Name=TCONS_00044205|organism=Clytia hemisphaerica|type=transcript|length=631bp
CAGCAATGTGAGCATATTTATTCTTATCATAAGCATATACTTTATAAGAA
TCAAATCAAACTACTCTTGAAAGGATACGAGAAAAAGTTGTACTATTTTA
CATTAAAGCCGTTACTGCGGAAACATTCAAATATGAGAAGCTTAAATTAT
ATAGACATTTTCATTTCACAGTTATAACTCTCATTTTTTCATCTTTAGAT
TGAACGTTGAAACAATTAAAATCAAAATTAACAATGAACATGAAAAATAT
AAAAAGACAGATGATATCACCGACAGATTCAATCAAACTGGCCGTCCTCC
ATCATGAGAATAGTGTAATTTGCCCCGACCTGATAAAACGTTTCCAgaaa
ttgaaagtttcattgagaATAACATGCCGGCATGCATAGAAACTATTGGA
CCAGCCAACCGCTTCCATGGATGTCCGACATAACAATCTAGGCCGCCCAA
AGAAGTTGAATGCCCGAAAGGAACACATGGTGAAAAAAGACATGTAAGCT
CATTTTATGATCAATAAATGTACCCAGATTATAATaagtaaaattttcat
attgatggCTGTCGCTGACCTAATTTTTAGCCGCCAAATGGTACATTTAG
GTAATGTAAGCCGCCAAAGTCAACTTTCAAT
Run BLAST on NCBI

transcript from alignment at sc0005155:246..876

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044205 ID=TCONS_00044205|Name=TCONS_00044205|organism=Clytia hemisphaerica|type=transcript|length=631bp|location=Sequence derived from alignment at sc0005155:246..876 (Clytia hemisphaerica)
ATTGAAAGTTGACTTTGGCGGCTTACATTACCTAAATGTACCATTTGGCG
GCTAAAAATTAGGTCAGCGACAGccatcaatatgaaaattttacttATTA
TAATCTGGGTACATTTATTGATCATAAAATGAGCTTACATGTCTTTTTTC
ACCATGTGTTCCTTTCGGGCATTCAACTTCTTTGGGCGGCCTAGATTGTT
ATGTCGGACATCCATGGAAGCGGTTGGCTGGTCCAATAGTTTCTATGCAT
GCCGGCATGTTATtctcaatgaaactttcaatttcTGGAAACGTTTTATC
AGGTCGGGGCAAATTACACTATTCTCATGATGGAGGACGGCCAGTTTGAT
TGAATCTGTCGGTGATATCATCTGTCTTTTTATATTTTTCATGTTCATTG
TTAATTTTGATTTTAATTGTTTCAACGTTCAATCTAAAGATGAAAAAATG
AGAGTTATAACTGTGAAATGAAAATGTCTATATAATTTAAGCTTCTCATA
TTTGAATGTTTCCGCAGTAACGGCTTTAATGTAAAATAGTACAACTTTTT
CTCGTATCCTTTCAAGAGTAGTTTGATTTGATTCTTATAAAGTATATGCT
TATGATAAGAATAAATATGCTCACATTGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027849XLOC_027849Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044205-exon-sc0005155-1491911889:246..876TCONS_00044205-exon-sc0005155-1491911889:246..876Clytia hemisphaericaexon
TCONS_00044205-exon-sc0005155-1510915933:246..876TCONS_00044205-exon-sc0005155-1510915933:246..876Clytia hemisphaericaexon
TCONS_00044205-exon-sc0005155-1575043694:246..876TCONS_00044205-exon-sc0005155-1575043694:246..876Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005155supercontigsc0005155:246..876 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.47386	1.67627	1.65299	1.56323	0.568675	0.719335	0.10984	0	0.0708446	0.438762	0	0	0.0559126	0.0580658	0	0	0	0.0646871	0.0893688	0	0	0	0.402559	0.0934399	0	0	0	0	0	0.19014
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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