TCONS_00044175 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044175
Unique NameTCONS_00044175
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044175 ID=TCONS_00044175|Name=TCONS_00044175|organism=Clytia hemisphaerica|type=transcript|length=338bp
cttaaaattttaaacttaCTTGTTATTTCTACAGGGTTGGCCATCAATAC
ACTCTCAGGTTCGCTGTATTTTTCCACGAACTTCCAGAAAATGGGGAGAG
CGGCACTTCCAGTAGTTTTGTTGAGAAAGATTGTGGCAATGAGTAATTGC
CATGGTTTTTGGTACAAATTTTCCTGCACTAAACTATATGGTGATTGTGG
AGGGACAAAAGTGATGGTTTGGTGAAGTCCGCATACTTTCGTAGATCGAT
AACTCCCCATTTCGTTTTTGCATTTCTTTGCTGTAaggaaaaatgaataa
aattattCAACCTCAGATGGATTGCACTCCTTGGAAGG
Run BLAST on NCBI

transcript from alignment at sc0005112:3094..3503-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044175 ID=TCONS_00044175|Name=TCONS_00044175|organism=Clytia hemisphaerica|type=transcript|length=410bp|location=Sequence derived from alignment at sc0005112:3094..3503- (Clytia hemisphaerica)
CTTAAAATTTTAAACTTACTTGTTATTTCTACAGGGTTGGCCATCAATAC
ACTCTCAGGTTCGCTGTATTTTTCGACGAACTTANACTTACTTGTTATTT
CTACAGGGTTGGCCATCAATACACTCTCAGGTTCGCTGTATTTTTCCACG
AACTTCCAGAAAATGGGGAGAGCGGCACTTCCAGTAGTTTTGTTGAGAAA
GATTGTGGCAATGAGTAATTGCCATGGTTTTTGGTACAAATTTTCCTGCA
CTAAACTATATGGTGATTGTGGAGGGACAAAAGTGATGGTTTGGTGAAGT
CCGCATACTTTCGTAGATCGATAACTCCCCATTTCGTTTTTGCATTTCTT
TGCTGTAAGGAAAAATGAATAAAATTATTCAACCTCAGATGGATTGCACT
CCTTGGAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027821XLOC_027821Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044175-exon-sc0005112-1575043694:3446..3503TCONS_00044175-exon-sc0005112-1575043694:3446..3503Clytia hemisphaericaexon
TCONS_00044175-exon-sc0005112-1575043694:3094..3373TCONS_00044175-exon-sc0005112-1575043694:3094..3373Clytia hemisphaericaexon
TCONS_00044175-exon-sc0005112-1510915933:3446..3503TCONS_00044175-exon-sc0005112-1510915933:3446..3503Clytia hemisphaericaexon
TCONS_00044175-exon-sc0005112-1510915933:3094..3373TCONS_00044175-exon-sc0005112-1510915933:3094..3373Clytia hemisphaericaexon
TCONS_00044175-exon-sc0005112-1491911889:3446..3503TCONS_00044175-exon-sc0005112-1491911889:3446..3503Clytia hemisphaericaexon
TCONS_00044175-exon-sc0005112-1491911889:3094..3373TCONS_00044175-exon-sc0005112-1491911889:3094..3373Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005112supercontigsc0005112:3094..3503 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.64352	1.80704	1.38372	1.51278	1.23186	0	2.56268	0.247968	1.28413	0.631697	3.99852	1.60964	1.08779	2.54951	0	2.28454	3.7873	0	0.221659	0.368646	2.26882	0	3.77135	5.87456	0.759569	2.32096	0.136207	2.75435	0.135217	5.41309
Blast
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BLAST of TCONS_00044175 vs. Swiss-Prot (Human)
Match: MBD4 (Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.211e-18
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = -1 
Query:    3 FVPPQSPYSLVQENLYQKPWQLLIATIFLNKTTGSAALPIFWKFVEKYSEPESVLMANPVEITSKFKIL 209
            + PP+SP++LVQE L+  PW+LLIATIFLN+T+G  A+P+ WKF+EKY   E    A+  +++   K L
Sbjct:  438 WTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPL 506
The following BLAST results are available for this feature:
BLAST of TCONS_00044175 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MBD42.211e-1849.28Methyl-CpG-binding domain protein 4 OS=Homo sapien... [more]
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