TCONS_00044164 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044164
Unique NameTCONS_00044164
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044164 ID=TCONS_00044164|Name=TCONS_00044164|organism=Clytia hemisphaerica|type=transcript|length=785bp
attcaacatgacatccagAATAAGGAATTACTGATTGAAACTTTAATCTA
TAGCAGTCAGAGAGGATAATAAAAAAGATACATTTGTTTTCACATTTCCA
GGGTGAATTGAATACAGTTGCAGGTATTCCACTAGAACAGCTTCAAACAC
GTAAAGCTACCATATTTCTCCCATCACGTAACAACATGCAAAGCGGAACA
CACAATATGAGGAAATGGACCTTATCATTTGATACACAACAAAGATGGGA
GAACCCACTCATGGGATGGTCATCAACAGCTGATCCACTTTCCAACACAC
AATTGAAGTTTGGCTCGAGAGAAGCGGCTGTTGCTTATTGTGAATCGCAC
GGTTGGAATTACGAGATCCAAGAGCCCACTCTACCGAAAGTTCGATCGAA
GTCATACGGAGCTAACTTCTCGTGGAACAAAAGAACTCGTATATCCTCCA
AGTAACGAAAATATGATGCATTTtcgctttttcttttgaaataatttttt
ttattaaatcgtAACAATTGTTTGAAAAGGCTTTCAAGCTTCACATTTTT
TGTGTATATGAATattattgtttgaaaaaaaatgtaaatataaaaGCAAG
GCATTTTTCTTAACTACTTTCGGcgcttgaaaaatgttttgaggactttt
tgaaattccttTGAGAGCAAAATATATAACACAGGATCTGTGATAAATCC
AGCAGCAAATGAAATTCCCATAACAAACCAAACTTCGGTCGAAATCTTTT
TACTGGAAAGCTTAGTAAAGAATATAATTTGATCA
Run BLAST on NCBI

transcript from alignment at sc0005094:3054..4690+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044164 ID=TCONS_00044164|Name=TCONS_00044164|organism=Clytia hemisphaerica|type=transcript|length=1637bp|location=Sequence derived from alignment at sc0005094:3054..4690+ (Clytia hemisphaerica)
attcaacatgacatccagAATAAGGAATTACTGATTGAAACTTTAATCTA
TAGCAGTCAGAGAGGATAATAAAAAAGATACATTTGTTTTCACATTTCCA
GGGTGAATTGAATACAGTTGCAGGTATTCCACTAGAACAGCTTCAAACAC
GTAAAGCTACCATATTTCTCCCATCACGTAACAACATGCAAAGCGGAACA
CACAATATGAGGAAATGGACCTTATCATTTGATACACAACAAAGATGGGA
GAACCCACTCATGGGATGGTCATCAACGTAAGAAAGAACCTTTTTGCTAG
TTTATTCTTATCAGGGTGTCTCACAAAAATATTCGCATAATAAGCACATT
TGGATGAAGAATAATAAATAAAACTATAATTAAATTTTAATGGGATGAAC
GTAAAAGAGCTAGAGCCTTCTAATTTTTATTTGTGTCAATTCTGTTAAAG
AGCTGATCCACTTTCCAACACACAATTGAAGTTTGGCTCGAGAGAAGCGG
CTGTTGCTTATTGTGAATCGCACGGTAAGTCTTTCCTTATTTCTCAgttg
aaggttttgtttttaaataaaagtgatatcatttgcttactcatcaattt
ttatttacacggatgtggagcaagattggtcagaaaaaggaagaaaaaaa
acttttttgtttaatcagcacaatataacgaTAGAGAGACACCGTCCTGA
TACCAGATATGTGCCTagtatgaaacggaaacacttgagtaaaatatgaa
aaacatatTGACCTAGAGTAAAAAGAAAATGGGagtatttttcatgaaaa
atattttttttaatgcaTTTGGGATCTCTGTGATAAGATCAATCTGACAA
CCAAAAATCGATAAAAGATTCTGCCTCTCCTCAAACCATCGGATAAAACG
TAGAGTTTTGCTAATAAGGAGAAGCCAAAAGTTAAGCTTAATTTTTGTTA
CATTAAAAAACTGTCTCTGAATTGTACATTGAGACCACCACAAGATATCT
TTACACTGGTATGTaaacttttttgtaaaattttgttttgtactTTCAGG
TTGGAATTACGAGATCCAAGAGCCCACTCTACCGAAAGTTCGATCGAAGT
CATACGGAGCTAACTTCTCGTGGAACAAAAGAACTCGTATATCCTCCAAG
TAACGAAAATATGATGCATTTtcgctttttcttttgaaataatttttttt
attaaatcgtAACAATTGTTTGAAAAGGCTTTCAAGCTTCACATTTTTTG
TGTATATGAATattattgtttgaaaaaaaatgtaaatataaaaGCAAGGC
TCAACTCCAATGAGAAACATTTTTCTTAACTACTTTCGGcacttgaaaaa
tgttttgaggactttttgaaattccttTGAGAGCAAAATATATAACACAG
GATCTGTGATAAATCCAGCAGCAAATGAAATTCNTGTAAATATAAAAGCA
AGGCATTTTTCTTAACTACTTTCGGcgcttgaaaaatgttttgaggactt
tttgaaattccttTGAGAGCAAAATATATAACACAGGATCTGTGATAAAT
CCAGCAGCAAATGAAATTCCCATAACAAACCAAACTTCGGTCGAAATCTT
TTTACTGGAAAGCTTAGTAAAGAATATAATTTGATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027810XLOC_027810Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044164-exon-sc0005094-1491911889:3054..3330TCONS_00044164-exon-sc0005094-1491911889:3054..3330Clytia hemisphaericaexon
TCONS_00044164-exon-sc0005094-1510915933:3054..3330TCONS_00044164-exon-sc0005094-1510915933:3054..3330Clytia hemisphaericaexon
TCONS_00044164-exon-sc0005094-1575043694:3054..3330TCONS_00044164-exon-sc0005094-1575043694:3054..3330Clytia hemisphaericaexon
TCONS_00044164-exon-sc0005094-1491911889:3504..3577TCONS_00044164-exon-sc0005094-1491911889:3504..3577Clytia hemisphaericaexon
TCONS_00044164-exon-sc0005094-1510915933:3504..3577TCONS_00044164-exon-sc0005094-1510915933:3504..3577Clytia hemisphaericaexon
TCONS_00044164-exon-sc0005094-1575043694:3504..3577TCONS_00044164-exon-sc0005094-1575043694:3504..3577Clytia hemisphaericaexon
TCONS_00044164-exon-sc0005094-1491911889:4103..4351TCONS_00044164-exon-sc0005094-1491911889:4103..4351Clytia hemisphaericaexon
TCONS_00044164-exon-sc0005094-1510915933:4103..4351TCONS_00044164-exon-sc0005094-1510915933:4103..4351Clytia hemisphaericaexon
TCONS_00044164-exon-sc0005094-1575043694:4103..4351TCONS_00044164-exon-sc0005094-1575043694:4103..4351Clytia hemisphaericaexon
TCONS_00044164-exon-sc0005094-1491911889:4506..4690TCONS_00044164-exon-sc0005094-1491911889:4506..4690Clytia hemisphaericaexon
TCONS_00044164-exon-sc0005094-1510915933:4506..4690TCONS_00044164-exon-sc0005094-1510915933:4506..4690Clytia hemisphaericaexon
TCONS_00044164-exon-sc0005094-1575043694:4506..4690TCONS_00044164-exon-sc0005094-1575043694:4506..4690Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005094supercontigsc0005094:3054..4690 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
274.213	278.092	282.932	277.828	184.73	131.733	142.301	138.113	108.478	98.1721	79.5629	87.8255	60.9131	64.1523	75.8252	76.868	164.422	161.371	63.3144	61.1838	153.227	139.601	128.885	123.467	145.618	139.522	92.8179	80.1295	85.0445	79.8907
Blast
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BLAST of TCONS_00044164 vs. Swiss-Prot (Human)
Match: NDUS4 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial OS=Homo sapiens GN=NDUFS4 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.030e-50
Identity = 70/116 (60.34%), Postives = 96/116 (82.76%), Query Frame = 3 
Query:  105 ELNTVAGIPLEQLQTRKATIFLPSRNNMQSGTHNMRKWTLSFDTQQRWENPLMGWSSTADPLSNTQLKFGSREAAVAYCESHGWNYEIQEPTLPKVRSKSYGANFSWNKRTRISSK 452
            ++ T+ G+P E ++TRK  IF+P+RNNMQSG +N +KW + FDT++RWENPLMGW+STADPLSN  L F ++E AV++ E +GW+Y+I+E  +PK +SKSYGANFSWNKRTR+S+K
Sbjct:   60 DITTLTGVPEEHIKTRKVRIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNMVLTFSTKEDAVSFAEKNGWSYDIEERKVPKPKSKSYGANFSWNKRTRVSTK 175
The following BLAST results are available for this feature:
BLAST of TCONS_00044164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NDUS41.030e-5060.34NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
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