TCONS_00044160 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044160
Unique NameTCONS_00044160
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044160 ID=TCONS_00044160|Name=TCONS_00044160|organism=Clytia hemisphaerica|type=transcript|length=327bp
GCGGAGAAAGTCATGCAGCGTGAGAACATGGATTGGGAGTGGCAACACAA
CGGAGATCTTTCATTATGGAACACAGTGAGTGCAACTACACAACACCCTG
TAACGAAAGAAGAAATATGGTTTAATCAAGTCACGGCTGCACATTCATCT
TACTATAAAGACATGTCAATTAATGTGAATAACCAACATTTACCGGCTAA
TCAATTTCCATTACATACTTGTTACGGTGATGGTGAAGAAATAACCGACG
AAGAGGTGGATGAAATTCGTTCGGCCACGTGGTCAAATGCAATGTCGTTG
AAATTACAACCTGGAGATGTTTTATNN
Run BLAST on NCBI

protein sequence of TCONS_00044160-protein

>TCONS_00044160-protein ID=TCONS_00044160-protein|Name=TCONS_00044160-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
AEKVMQRENMDWEWQHNGDLSLWNTVSATTQHPVTKEEIWFNQVTAAHSS
YYKDMSINVNNQHLPANQFPLHTCYGDGEEITDEEVDEIRSATWSNAMSL
KLQPGDVLX
Run BLAST on NCBI

transcript from alignment at sc0005086:339..1144+

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044160 ID=TCONS_00044160|Name=TCONS_00044160|organism=Clytia hemisphaerica|type=transcript|length=806bp|location=Sequence derived from alignment at sc0005086:339..1144+ (Clytia hemisphaerica)
GCGGAGAAAGTCATGCAGCGTGAGAACATGGATTGGGAGTGGCAACACAA
CGGAGATCTTTCATTATGGAACACAGTGAGTGCAACTACACAACACCCTG
TAACGAAAGAAGAAATATGGTTTAATCAAGTCACGGCTGCACATTCATCT
TACTATAAAGACATGTCAATTGTAAGTTATCTTTCAAAACAATATTTCAT
CAGAAAGTTgtagagtctgctaaatcaaGCGCCTCACGCGCCCACGCCAT
TTTTTCATGCggcttgaattttttgacatacCTTATATTCTTCACGCGCC
TTTATTTTTCACGCGCCTTGATTATTTTCATGCGCCCTTGAATTTTCACG
CGCCCATATTTTCTACGCGCCTTAATTTTTTTCACCCGCCCATATTTTCC
AGgcgcttttaattttttttcacatgcGCCCTAAAATTTTTACGCGCTCT
AATTTTTCACGTGTCTTGATTCTTCACGTGCCTTGATTTGTCACTTAAGA
AATCCTTAAATTTAAGTTTCCCACAGTTTTAAAAGAATTACTCGGGGGTC
TCAATAAGAAGAGGGGGGGGGTTCCGAAAATTTCTgaagaaaattaataa
gcgggggagaCATTTATTCGCGACCTTAGAGTAATCCTTTTCTTTTCCAG
AATGTGAATAACCAACATTTACCGGCTAATCAATTTCCATTACATACTTG
TTACGGTGATGGTGAAGAAATAACCGACGAAGAGGTGGATGAAATTCGTT
CGGCCACGTGGTCAAATGCAATGTCGTTGAAATTACAACCTGGAGATGTT
TTATNN

Coding sequence (CDS) from alignment at sc0005086:339..1144+

>TCONS_00044160 ID=TCONS_00044160|Name=TCONS_00044160|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0005086:339..1144+ (Clytia hemisphaerica)
GCGGAGAAAGTCATGCAGCGTGAGAACATGGATTGGGAGTGGCAACACAA
CGGAGATCTTTCATTATGGAACACAGTGAGTGCAACTACACAACACCCTG
TAACGAAAGAAGAAATATGGTTTAATCAAGTCACGGCTGCACATTCATCT
TACTATAAAGACATGTCAATTAATGTGAATAACCAACATTTACCGGCTAA
TCAATTTCCATTACATACTTGTTACGGTGATGGTGAAGAAATAACCGACG
AAGAGGTGGATGAAATTCGTTCGGCCACGTGGTCAAATGCAATGTCGTTG
AAATTACAACCTGGAGATGTTTTATNNGCGGAGAAAGTCATGCAGCGTGA
GAACATGGATTGGGAGTGGCAACACAACGGAGATCTTTCATTATGGAACA
CAGTGAGTGCAACTACACAACACCCTGTAACGAAAGAAGAAATATGGTTT
AATCAAGTCACGGCTGCACATTCATCTTACTATAAAGACATGTCAATTAA
TGTGAATAACCAACATTTACCGGCTAATCAATTTCCATTACATACTTGTT
ACGGTGATGGTGAAGAAATAACCGACGAAGAGGTGGATGAAATTCGTTCG
GCCACGTGGTCAAATGCAATGTCGTTGAAATTACAACCTGGAGATGTTTT
ATNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027806XLOC_027806Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044160-proteinTCONS_00044160-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044160-exon-sc0005086-1491911889:339..509TCONS_00044160-exon-sc0005086-1491911889:339..509Clytia hemisphaericaexon
TCONS_00044160-exon-sc0005086-1510915933:339..509TCONS_00044160-exon-sc0005086-1510915933:339..509Clytia hemisphaericaexon
TCONS_00044160-exon-sc0005086-1575043694:339..509TCONS_00044160-exon-sc0005086-1575043694:339..509Clytia hemisphaericaexon
TCONS_00044160-exon-sc0005086-1491911889:989..1144TCONS_00044160-exon-sc0005086-1491911889:989..1144Clytia hemisphaericaexon
TCONS_00044160-exon-sc0005086-1510915933:989..1144TCONS_00044160-exon-sc0005086-1510915933:989..1144Clytia hemisphaericaexon
TCONS_00044160-exon-sc0005086-1575043694:989..1144TCONS_00044160-exon-sc0005086-1575043694:989..1144Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005086supercontigsc0005086:339..1144 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.320381	2.65836	4.69563	2.02618	7.48785	0	2.79817	1.39001	2.25803	0.341432	0.285978	0.225693	0.273357	0	0.731566	0	0.85287	2.21873	1.70656	2.85689	1.83384	0.943785	1.15291	0	0.259855
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003819TauD/TfdA-like
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044160 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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