TCONS_00044145 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044145
Unique NameTCONS_00044145
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length681

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044145 ID=TCONS_00044145|Name=TCONS_00044145|organism=Clytia hemisphaerica|type=transcript|length=681bp
cgaatattgtgacttttgacctcCGGGCAGTAGGTCTAACCCCCCGaaca
agcattagttgaccccatggacaatcaaaattaccctcaaacagagaaGA
ATTACCCCTAAGCAGAGCAAGTTTGCCCCGGGGTTTCGAAGCATGGTGGT
TTATGTCATCTTCTATGTCGAGCCAGTGTAGATTAGTATCAACAGTCATT
AagtattttcaaagtttttggagGTGGTTCTGACAGGACTATCCAGGTCT
CACCGAATGACAACACCGAGAAGGAAAGACGACTCTAAGGGTTACTTGGa
ctgtaaatatttttgacGAACAATTTTCAACAATATTGTTAAAAGACAAT
TTTCTTTCTGTTCAAAAATTCCCCTTTATTCTTGGGATATTTCAAATTga
cctgacaatatattgcggaccgGAACTCAGCAATTTattgtcaaaatata
ttggCCGACGAAACATAGTATAGATCAGATAgttcagtcggtagagcatt
cgccttacaatccaaGGGTTGTGGGTAGAATGAGTAGCTTAAATttggta
atctgatctaggtgGTAAGTTACTGGGATCTGAGATTGGGTAATAAGGCT
CTCCACagctgttttttcaaaaatacaagtcaAGTTTTTAGCTTTTAAAG
CGCGATTCTGACTGACTTATGCATATTGTCG
Run BLAST on NCBI

transcript from alignment at sc0005063:3935..4615

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044145 ID=TCONS_00044145|Name=TCONS_00044145|organism=Clytia hemisphaerica|type=transcript|length=681bp|location=Sequence derived from alignment at sc0005063:3935..4615 (Clytia hemisphaerica)
CGACAATATGCATAAGTCAGTCAGAATCGCGCTTTAAAAGCTAAAAACTt
gacttgtatttttgaaaaaacagctGTGGAGAGCCTTATTACCCAATCTC
AGATCCCAGTAACTTACcacctagatcagattaccaaATTTAAGCTACTC
ATTCTACCCACAACCCttggattgtaaggcgaatgctctaccgactgaac
TATCTGATCTATACTATGTTTCGTCGGccaatatattttgacaatAAATT
GCTGAGTTCcggtccgcaatatattgtcaggtcAATTTGAAATATCCCAA
GAATAAAGGGGAATTTTTGAACAGAAAGAAAATTGTCTTTTAACAATATT
GTTGAAAATTGTTCgtcaaaaatatttacagtCCAAGTAACCCTTAGAGT
CGTCTTTCCTTCTCGGTGTTGTCATTCGGTGAGACCTGGATAGTCCTGTC
AGAACCACctccaaaaactttgaaaatactTAATGACTGTTGATACTAAT
CTACACTGGCTCGACATAGAAGATGACATAAACCACCATGCTTCGAAACC
CCGGGGCAAACTTGCTCTGCTTAGGGGTAATTCttctctgtttgagggta
attttgattgtccatggggtcaactaatgcttgttCGGGGGGTTAGACCT
ACTGCCCGgaggtcaaaagtcacaatattcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027792XLOC_027792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044145-exon-sc0005063-1491911889:3935..4615TCONS_00044145-exon-sc0005063-1491911889:3935..4615Clytia hemisphaericaexon
TCONS_00044145-exon-sc0005063-1510915933:3935..4615TCONS_00044145-exon-sc0005063-1510915933:3935..4615Clytia hemisphaericaexon
TCONS_00044145-exon-sc0005063-1575043694:3935..4615TCONS_00044145-exon-sc0005063-1575043694:3935..4615Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005063supercontigsc0005063:3935..4615 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.526153	0.366487	1.617	1.16567	1.41909	0.480594	0.579817	0.542817	0.253359	0.156913	0.304608	0.250296	0.449907	0.571063	0.341448	0.366426	0.451407	0.404843	0	0.167223	0.218021	0.425371	0.172365	0.156705	0.322804	0.216071	0.927592	1.09995	1.2514	1.18998
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044145 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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