TCONS_00043953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043953
Unique NameTCONS_00043953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043953 ID=TCONS_00043953|Name=TCONS_00043953|organism=Clytia hemisphaerica|type=transcript|length=308bp
TTTGCATATTGCGGGGCATACCTGCCTCCCATGGATGTACCGCTTATTTG
TAAGTAGTGGTCATTTTGGAATCGAATGTTACTGTGTTTGAGGATAAATT
CTAAGATAATTGTGATGGTTGCCGTGTTGGGGGCATCTGGTGGTAGGATA
TGAAGAGATTCTTTGTAGTATTTGGAAATTGTTGCTATACCTTCTTCATG
GGGGATATTTGTATATAATGATGATACGTCGGCTGTAACCATGATCATTT
CTGAATGAGGGAGGATGATATTGTCTAGGATTTGTAGCATGTGTTTAGTG
TCTTTGAT
Run BLAST on NCBI

protein sequence of TCONS_00043953-protein

>TCONS_00043953-protein ID=TCONS_00043953-protein|Name=TCONS_00043953-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
IKDTKHMLQILDNIILPHSEMIMVTADVSSLYTNIPHEEGIATISKYYKE
SLHILPPDAPNTATITIILEFILKHSNIRFQNDHYLQISGTSMGGRYAPQ
YA
Run BLAST on NCBI

transcript from alignment at sc0004762:4110..4417

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043953 ID=TCONS_00043953|Name=TCONS_00043953|organism=Clytia hemisphaerica|type=transcript|length=308bp|location=Sequence derived from alignment at sc0004762:4110..4417 (Clytia hemisphaerica)
ATCAAAGACACTAAACACATGCTACAAATCCTAGACAATATCATCCTCCC
TCATTCAGAAATGATCATGGTTACAGCCGACGTATCATCATTATATACAA
ATATCCCCCATGAAGAAGGTATAGCAACAATTTCCAAATACTACAAAGAA
TCTCTTCATATCCTACCACCAGATGCCCCCAACACGGCAACCATCACAAT
TATCTTAGAATTTATCCTCAAACACAGTAACATTCGATTCCAAAATGACC
ACTACTTACAAATAAGCGGTACATCCATGGGAGGCAGGTATGCCCCGCAA
TATGCAAA

Coding sequence (CDS) from alignment at sc0004762:4110..4417

>TCONS_00043953 ID=TCONS_00043953|Name=TCONS_00043953|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0004762:4110..4417 (Clytia hemisphaerica)
ATCAAAGACACTAAACACATGCTACAAATCCTAGACAATATCATCCTCCC
TCATTCAGAAATGATCATGGTTACAGCCGACGTATCATCATTATATACAA
ATATCCCCCATGAAGAAGGTATAGCAACAATTTCCAAATACTACAAAGAA
TCTCTTCATATCCTACCACCAGATGCCCCCAACACGGCAACCATCACAAT
TATCTTAGAATTTATCCTCAAACACAGTAACATTCGATTCCAAAATGACC
ACTACTTACAAATAAGCGGTACATCCATGGGAGGCAGGTATGCCCCGCAA
TATGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027615XLOC_027615Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043953-exon-sc0004762-1491911889:4110..4417TCONS_00043953-exon-sc0004762-1491911889:4110..4417Clytia hemisphaericaexon
TCONS_00043953-exon-sc0004762-1510915933:4110..4417TCONS_00043953-exon-sc0004762-1510915933:4110..4417Clytia hemisphaericaexon
TCONS_00043953-exon-sc0004762-1575043694:4110..4417TCONS_00043953-exon-sc0004762-1575043694:4110..4417Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043953-proteinTCONS_00043953-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004762supercontigsc0004762:4110..4417 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.460476	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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