TCONS_00043761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043761
Unique NameTCONS_00043761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length997

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043761 ID=TCONS_00043761|Name=TCONS_00043761|organism=Clytia hemisphaerica|type=transcript|length=997bp
TAAATATTATACTTTCTTTCACTCCTTAGTTGACACATACGTCaaaaaaa
gacaatgaaatgaTGCAAAATTGAagctaattgaaaaaaaaagaacagca
CAGAAATGAAATTCTATGAGCTATGTATGATCATTCTTATCGTTACAACG
CCTCTACTGATCAACACAAAAACAACACAGAAACGAACTTACTCAAAACA
AAGAGTTGTGGTAATATCATTTGATGGATTCAGGTATGATTATATCAAAA
GAGACAACTTAGAAGCGTTCAAGAAGTTTGCTCATTACGGAGCATCAGCA
TCTTCTTTAAAGCCTGTATTCACCACTAAGACATTCCCAAATCACTTTAC
AATAGCAACTGGGCTTTACGAGGAAACGCATGGGATTGTGGGTAACCAGT
TCTACGATCCAGTCTTTAAAGATACTTTTCATAAATCGAACGGTGCAAAA
TGGTGGACTGGCGCCAAACCAATATGGATGCTGAACGAAGAACGCATCAT
TGAGGGAACCAATAAAACAGGCAAGAGCGCTACCATCTTTTGGCCTGGGT
CAGAATCAAGTTATGACGGGAAATATCCTTCGTACACGTATAAGGAATAT
AATGCATCGTACTCAACTAAGAACCGTTTTGATGCGATTGTTAAACTGAT
GTTGGATGACGATGATCTGAACTTGGTGATGTGTTACATAGAGGAGCCAG
ATAATACGGCCCATAATCATGGTCCTGATAATGACGTAACGAAAGCCATA
ttgaaaaaactgaataaagaatttgattatttcataCGGAAGATGGATAG
AGCGAATCTGTTAGATACCGTCAACATTATAGTTGTCAGTGATCATGGAT
TTCTACCGATCCCTCGCCAAAACGTCAAATACCTTTCAGATTACCTAAAC
AACACATCCGATTTTCATCTTGATAGTCACGGTGTGCTACTTCATGTTCG
ACCGCTTGAAGGTAAAAAAGAAGAAGTATATAAAGCACTGAAGAAAA
Run BLAST on NCBI

protein sequence of TCONS_00043761-protein

>TCONS_00043761-protein ID=TCONS_00043761-protein|Name=TCONS_00043761-protein|organism=Clytia hemisphaerica|type=polypeptide|length=297bp
MKFYELCMIILIVTTPLLINTKTTQKRTYSKQRVVVISFDGFRYDYIKRD
NLEAFKKFAHYGASASSLKPVFTTKTFPNHFTIATGLYEETHGIVGNQFY
DPVFKDTFHKSNGAKWWTGAKPIWMLNEERIIEGTNKTGKSATIFWPGSE
SSYDGKYPSYTYKEYNASYSTKNRFDAIVKLMLDDDDLNLVMCYIEEPDN
TAHNHGPDNDVTKAILKKLNKEFDYFIRKMDRANLLDTVNIIVVSDHGFL
PIPRQNVKYLSDYLNNTSDFHLDSHGVLLHVRPLEGKKEEVYKALKK
Run BLAST on NCBI

transcript from alignment at sc0004542:1..5171-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043761 ID=TCONS_00043761|Name=TCONS_00043761|organism=Clytia hemisphaerica|type=transcript|length=5171bp|location=Sequence derived from alignment at sc0004542:1..5171- (Clytia hemisphaerica)
TAAATATTATACTTTCTTTCACTCCTTAGTTGACACATACGTCAAAAAAA
GACAATGAAATGATGCAAAATTGAAGCTAATTGAAAAAAAAAGAACAGCA
CAGAAATGAAATTCTATGAGCTATGTATGATCATTCTTATCGTTACAACG
CCTCTACTGATCAACACAAAAACAACACAGAAACGAACTTACTCAAAACA
AAGAGTTGTGGTAATATCATTTGATGGATTCAGGTATGATTATATCAAAA
GAGACAACTTAGAAGCGTTCAAGAAGTTTGCTCATTACGGAGCATCAGCA
TCTTCTTTAAAGCCTGTATTCACCACTAAGACATTCCCAAATCACTTTAC
AATAGCAACTGGGCTTTACGAGGAAACGCATGGGATTGTGGGTAACCAGT
TCTACGATCCAGTCTTTAAAGATACTTTTCATAAATCGAACGGTGCAAAA
TGGTGGACTGGCGCCAAACCAATATGGATGCTGAACGAAGAACGCATCAT
TGAGGGAACCAATAAAACAGGCAAGAGCGCTACCATCTTTTGGCCTGGGT
CAGAATCAAGTTATGACGGGAAATATCCTTCGTACACGTATAAGGAATAT
AATGCATCGTACTCAACTAAGAACCGTTTTGATGCGATTGTTAAACTGAT
GTTGGATGACGATGATCTGAACTTGGTGATGTGTTACATAGAGGAGCCAG
ATAATACGGCCCATAATCATGGTCCTGATAATGACGTAACGAAAGCCATA
TTGAAAAAACTGAATAAAGAATTTGATTATTTCATACGGAAGATGGATAG
AGCGAATCTGTTAGATACCGTAAGTTCAAGTAATTTATCGTCTATTTTTT
TACGAATGAAATTTTTTCTACCTTTGATTTTCTCTACTTATTGATTGAAA
AGTGCTCCAAACTGTAGTTAACTCTCTAGCTACGGTTATTATTTATTCTA
ACGCATCCTGTCATGTTTTTGCGAATGAAAATACTAGAATTCAATCAGGG
ATTTTTCTATCTTTGATTTTCTCTACTTATCGAAAAGTGTGAAACTCGTA
CAGAATGCAGAATTTCCAGAGGGTCTAAAAGAGTGTTTTTTCATTATTCC
AGGGGGTATAAAATTATTTTAAAATTTCCAAGGGGTAAAAGACTGACTTT
AGTTCGTCCACCGTCACTTTAAGGTACGAAAAGCGATTTTCCAAGGGATT
TTTAGCAAGTTTTTCCCTTTTCCAGGGGGTATCAACCAGTGCCGTAGCAA
CTGGGGGGGCAAGGGGGGGGCCAAGGGGGGGCTATGCCCCCCCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TCCCCCCCCCCCCCCAATATGAAAATGCTTCCTACGGCACTGGTATCAAC
ACATTTCTAAGAAATCTTTTTTTACTTGAAAAGGTTCGTCCACCCCCTGT
ATGGAAATTTAATGGAATGGCCCAATACATCCTGTCGTCCCAATTCTATT
ATATATAACTTGTAACGGGTGGCCCACGAAAGTGTGTTTTTTTATACTTT
TGGAAAAGTGAATTTTTACATAAGTTTAGAACTAGTGGCTCAAATTAAAA
AAAACTCAAGTTTTAAGTAAGGGTATATTCTTTCTAAATATAAAAATCCA
AGCACTTTGGAACATTTGTTCGGCCTCAAGATGGCGAGAAACGTCCGAAA
TTTTTCGTTGGTCACCCGGTGTAACCGTAAATCTTTACTCCCCGGAAAAA
ATCACTCCCTCAGTTATAATTTCCCGGGAAAAAATGACCCCCGGAGTAAT
AATTACCTGAGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNATACTTTGCCATAAAGAGAATGAAATTTGACTTTACTACCAA
TTCTATCCAATATAAGAGTAGGTCAAACATCGTGCGGGTAGGCGAGGCAA
AAATTCTAAAACTGCCGCTGGTTTAGCCTGGACTACTGGACTTGTTAATC
TATTGCGCGCACAGGCTCCGACAAAGCCAAAATCTTTTCGTTCAGTTGCT
TTTTAAAGGCCCATTTGCGCTGCGCGGCTGGGCCAAATAGCAGTAAAAGT
TTCCATATTGTTTTTGTTATTTATTCATGATAAACAGGAAAAAAAAGATT
AGGAAACCGAATAATGATCGTGATCTATGCTAGTTTTTTGGTATACTATC
AGGGGAGTAAAATTTTCTGAAGGGAGTCATTATTTTTGCGTAAATTTATA
CTCCCGGAAGTAATAATTTCCTGGGAAAAGATTACTGGGGAGTAATTATT
TCCCAGTAAATAATGACTGGAGAGTATAAATTTTGGGGAGTAATATTTTA
CTGTGACACCGGTTTGTATTCCTGAACGATTACCGTTAATTCCGCCAGAG
CGCATTATCGGAAGTGCCCCTACATCGATATAGAGATTTCTCATATAAGC
TACGGGTATTATGTTATGGAAGTAGACGTTCTATTTGTGTAAGGGATCTT
TTCTTTAGATTCGAATGTTTGCATTTCCATAATAGCGGAAACTACGTAAC
AAACCTTTATCATTTCATAACAATTTAATGCTTTTTATTTCAGGTCAACA
TTATAGTTGTCAGTGATCATGGATTTCTACCGATCCCTCGCCAAAACGTC
AAATACCTTTCAGATTACCTAAACAACACATCCGATTTTCATCTTGATAG
TCACGGTGTGCTACTTCATGTTCGACCGCTTGAAGGTAAAAAAGAAGAAG
TATATAAAGCACTGAAGAAAA

Coding sequence (CDS) from alignment at sc0004542:1..5171-

>TCONS_00043761 ID=TCONS_00043761|Name=TCONS_00043761|organism=Clytia hemisphaerica|type=CDS|length=1782bp|location=Sequence derived from alignment at sc0004542:1..5171- (Clytia hemisphaerica)
GTCAACATTATAGTTGTCAGTGATCATGGATTTCTACCGATCCCTCGCCA
AAACGTCAAATACCTTTCAGATTACCTAAACAACACATCCGATTTTCATC
TTGATAGTCACGGTGTGCTACTTCATGTTCGACCGCTTGAAGGTAAAAAA
GAAGAAGTATATAAAGCACTGAAGAAAATGAAATTCTATGAGCTATGTAT
GATCATTCTTATCGTTACAACGCCTCTACTGATCAACACAAAAACAACAC
AGAAACGAACTTACTCAAAACAAAGAGTTGTGGTAATATCATTTGATGGA
TTCAGGTATGATTATATCAAAAGAGACAACTTAGAAGCGTTCAAGAAGTT
TGCTCATTACGGAGCATCAGCATCTTCTTTAAAGCCTGTATTCACCACTA
AGACATTCCCAAATCACTTTACAATAGCAACTGGGCTTTACGAGGAAACG
CATGGGATTGTGGGTAACCAGTTCTACGATCCAGTCTTTAAAGATACTTT
TCATAAATCGAACGGTGCAAAATGGTGGACTGGCGCCAAACCAATATGGA
TGCTGAACGAAGAACGCATCATTGAGGGAACCAATAAAACAGGCAAGAGC
GCTACCATCTTTTGGCCTGGGTCAGAATCAAGTTATGACGGGAAATATCC
TTCGTACACGTATAAGGAATATAATGCATCGTACTCAACTAAGAACCGTT
TTGATGCGATTGTTAAACTGATGTTGGATGACGATGATCTGAACTTGGTG
ATGTGTTACATAGAGGAGCCAGATAATACGGCCCATAATCATGGTCCTGA
TAATGACGTAACGAAAGCCATATTGAAAAAACTGAATAAAGAATTTGATT
ATTTCATACGGAAGATGGATAGAGCGAATCTGTTAGATACCGTCAACATT
ATAGTTGTCAGTGATCATGGATTTCTACCGATCCCTCGCCAAAACGTCAA
ATACCTTTCAGATTACCTAAACAACACATCCGATTTTCATCTTGATAGTC
ACGGTGTGCTACTTCATGTTCGACCGCTTGAAGGTAAAAAAGAAGAAGTA
TATAAAGCACTGAAGAAAATGAAATTCTATGAGCTATGTATGATCATTCT
TATCGTTACAACGCCTCTACTGATCAACACAAAAACAACACAGAAACGAA
CTTACTCAAAACAAAGAGTTGTGGTAATATCATTTGATGGATTCAGGTAT
GATTATATCAAAAGAGACAACTTAGAAGCGTTCAAGAAGTTTGCTCATTA
CGGAGCATCAGCATCTTCTTTAAAGCCTGTATTCACCACTAAGACATTCC
CAAATCACTTTACAATAGCAACTGGGCTTTACGAGGAAACGCATGGGATT
GTGGGTAACCAGTTCTACGATCCAGTCTTTAAAGATACTTTTCATAAATC
GAACGGTGCAAAATGGTGGACTGGCGCCAAACCAATATGGATGCTGAACG
AAGAACGCATCATTGAGGGAACCAATAAAACAGGCAAGAGCGCTACCATC
TTTTGGCCTGGGTCAGAATCAAGTTATGACGGGAAATATCCTTCGTACAC
GTATAAGGAATATAATGCATCGTACTCAACTAAGAACCGTTTTGATGCGA
TTGTTAAACTGATGTTGGATGACGATGATCTGAACTTGGTGATGTGTTAC
ATAGAGGAGCCAGATAATACGGCCCATAATCATGGTCCTGATAATGACGT
AACGAAAGCCATATTGAAAAAACTGAATAAAGAATTTGATTATTTCATAC
GGAAGATGGATAGAGCGAATCTGTTAGATACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027437XLOC_027437Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043761-proteinTCONS_00043761-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043761-exon-sc0004542-1575043694:4353..5171TCONS_00043761-exon-sc0004542-1575043694:4353..5171Clytia hemisphaericaexon
TCONS_00043761-exon-sc0004542-1575043694:1..178TCONS_00043761-exon-sc0004542-1575043694:1..178Clytia hemisphaericaexon
TCONS_00043761-exon-sc0004542-1510915933:4353..5171TCONS_00043761-exon-sc0004542-1510915933:4353..5171Clytia hemisphaericaexon
TCONS_00043761-exon-sc0004542-1510915933:1..178TCONS_00043761-exon-sc0004542-1510915933:1..178Clytia hemisphaericaexon
TCONS_00043761-exon-sc0004542-1491911889:4353..5171TCONS_00043761-exon-sc0004542-1491911889:4353..5171Clytia hemisphaericaexon
TCONS_00043761-exon-sc0004542-1491911889:1..178TCONS_00043761-exon-sc0004542-1491911889:1..178Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004542supercontigsc0004542:1..5171 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.995	9.61499	4.53694	2.3939	14.8146	13.3859	29.2891	30.7257	18.7801	18.7507	12.6806	13.2832	13.145	8.1161	9.40802	9.24575	13.9925	14.4111	13.9751	16.9277	10.8826	12.1026	11.9247	12.1553	11.7946	10.8716	9.38369	7.64267	12.9426	16.4449
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017849Alkaline_Pase-like_a/b/a
IPR002591Phosphodiest/P_Trfase
IPR017850Alkaline_phosphatase_core
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
Blast
[Close]
BLAST of TCONS_00043761 vs. Swiss-Prot (Human)
Match: ENPP5 (Ectonucleotide pyrophosphatase/phosphodiesterase family member 5 OS=Homo sapiens GN=ENPP5 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.090e-46
Identity = 91/281 (32.38%), Postives = 151/281 (53.74%), Query Frame = 1 
Query:  160 INTKTTQKRTYSKQRVVVISFDGFRYDYIKRDNLEAFKKFAHYGASASSLKPVFTTKTFPNHFTIATGLYEETHGIVGNQFYDPVFKDTFHKSN----GAKWWTGAKPIWMLNEERIIEGTNKTGKSATIFWPGSESSYDGKYPSYTYKEYNASYSTKNRFDAIVKXXXXXXXXXXVMCYIEEPDNTAHNHGPDNDVTKAILKKLNKEFDYFIRKMDRANLLDTVNIIVVSDHGFLPIPRQNVKYLSDYLNNTSDFHLDSHGVLLHVRPLEGKKEEVYKAL 990
            ++  TT      +Q+V+++SFDGFR+DY+ +     F     YG     +  VF TKT+PNH+T+ TGL+ E HGIV N  +DP+   +F   +     +K+W  A PIW+ N+            S    WPG++     ++P++ Y  YN S S ++R   I++     + +NL + Y E+PD+  H+ GPD+ +   ++  ++K+  Y I+ + +A L +T+N+I+ SDHG      + +  L  YL+      +D   V   + P EGK +EVY+AL
Sbjct:   15 LSLSTTFSLQPDQQKVLLVSFDGFRWDYLYKVPTPHFHYIMKYGVHVKQVTNVFITKTYPNHYTLVTGLFAENHGIVANDMFDPIRNKSFSLDHMNIYDSKFWEEATPIWITNQR-------AGHTSGAAMWPGTDVKIHKRFPTH-YMPYNESVSFEDRVAKIIEWFTSKEPINLGLLYWEDPDDMGHHLGPDSPLMGPVISDIDKKLGYLIQMLKKAKLWNTLNLIITSDHGMTQCSEERLIELDQYLDKDHYTLIDQSPVAA-ILPKEGKFDEVYEAL 286
The following BLAST results are available for this feature:
BLAST of TCONS_00043761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ENPP55.090e-4632.38Ectonucleotide pyrophosphatase/phosphodiesterase f... [more]
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