TCONS_00043624 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043624
Unique NameTCONS_00043624
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043624 ID=TCONS_00043624|Name=TCONS_00043624|organism=Clytia hemisphaerica|type=transcript|length=583bp
CGAATGTTGTTAGTTTATTGGACGCTTTACTTACGTCTCTGTTTATGTGT
TGTTTTGCTCTATAACTTTGGTGAGGTCGCCATCAAGATTTACTTCGTTT
CTTCAAGTCTTTTGAAATTTGTCTTTCGAAATGCCACATTCAAGGGGCTG
GAAGATTTTAAACCAGAAACTTCATGAAGCACGAGTGAAGGAGGAGAAAG
AGGCGAAGAAAGCACAACTAGACGCTCGCCATGAATATCTTCTTGGAAAT
ATTTCCGATGCACTTAATGTCGATTACAATGAAATTGTGGAACATATCAT
TGAAGGAACACAGATCGAAACGATCACCAGTTTCTTTCGAGAAAACGGAT
CAAGATccagtttgatttttttctatcaaCAAATGGAAGCTACTAATGAT
GGAGtgGATCACATGCGTCTTGGACACGGTGGCAATCAACTGgtcaacaa
aaccaaacataaATTATTTCTGACTGATGGATTGGCAGAAAAATTGACTG
GATTCTGTTTGTATTTCGCTAAGatcaacaaaacaaaagaaatcactGCA
CAAAATATACATAATGTAAGTAAGTTGGATCAG
Run BLAST on NCBI

transcript from alignment at sc0004401:2858..5183+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043624 ID=TCONS_00043624|Name=TCONS_00043624|organism=Clytia hemisphaerica|type=transcript|length=2326bp|location=Sequence derived from alignment at sc0004401:2858..5183+ (Clytia hemisphaerica)
CGAATGTTGTTAGTTTATTGGACGCTTTACTTACGTCTCTGTTTATGTGT
TGTTTTGCTCTATAACTTTGGTGAGGTCGCCATCAAGATTTACTTCGTTT
CTTCAAGTCTTTTGAAATTTGTCTTTCGAAATGCCACATTCAAGGGGCTG
GAAGATTTTAAACCAGAAACTTCATGAAGTATGTTTTGTTTTCTGGTtcc
tatacacgttttttttaagaaacacacttttaagaaacacgaggctcaga
atccctaaaaactaagaaacgtctaagaaacatgctgaggttgagaatga
gaaaataacattttttaaatcgtttttttttaagaaccttccaatcaaaa
caattttttttttctttgcatgaaaaataggctgattatgattataaaca
atagaattacatggaaacgaggccgggctgtatgttttaatttttataag
tgATTTCACCGTGAACATAAACAGTCATAAACATTgatagaaaaaagctt
ttgagctcaaattttcagcatgcacttgtctttataggaggaatacaaat
atatagttttcaatatgGTTTGAAGACCTTCCAAAAATACCCaacaattc
gggaaaggtgtattactttctctaattcgaagacgATTCTTGGTCCctcg
aagatcgaattagagagagtcaactgcaCATTTCTAACAGTTTAAACTTC
TTTCACAACGGGTTAAACTTCTTACTACAGGCACGAGTGAAGGAGGAGAA
AGAGGCGAAGAAAGCACAACTAGACGCTCGCCATGAATATCTTCTTGGAA
ATATTTCCGATGCACTTAATGTCGATTACAATGAAATTGTGGAACATATC
ATTGAAGGAACACAGGTTCGTGATaccttgattttattttttttcaatcc
tgTTGAAGCATTATCTCTATTTCATGCAAGTCAAATTATACCACATCTCT
TTTAAActctttatttattatttattttatgtcagtttttttctttgtag
CTTATCATTATCAGGTACTCTTTTTCGTCTGGATATTTCCGGACTGTTCC
GGATTCTTTTTCTTTCGATTACCGATTACCGAACCAGCGTCTCTTTAAAG
CTACAGATTAAGGAAAAAAAGACTGAGTGAGTTCATCCTTTGCACATTTT
TGGCAACATAATGAAGTTGAAAACCTATAATCTGGAACAACTGATGGCAG
TCAACTTTCATTAATTCGAACTCGAGAGGGTTGCCCCTCGACAGgaactg
agaattagttcgatttatcaaagattcgaatagtagtAAGTCGAATTTTA
GTCCActgtatttattttctttaatttctttgtTTGGTTTTTCAGATCGA
AACGATCACCAGTTTCTTTCGAGAAAACGGATCAAGATccagtttgattt
ttttctatcaaCAAATGGAAGCTACTAATGATGGAGGTTAGTAGATTTTG
ATCACTGATCTCTATTTGACTGGATCGGGCTTCTCAAATGACAGAGGAAG
CGTGTCCAGTTTTAGAGCTGAATTGTCCGCCATCTTTTTTTTGATTCGGC
TCGTTAACATCGCGAttcgaatattttgaaattcaaacgttcgaaaatct
gaTGTAAACATGCGAAATCAGCCGTTACaagaattttggatgttcttata
aacaaaaaaaacaacgtttaCCTAGAAAAAAATCTATCATGGTAATTCGA
ACAGATTCGAACGTGGTTTTGGTAGCTGAGGACCAAGATATTCTAACCCC
GGGAGGCACTTGGCAAAAAAGGGTACGTGGATGAGCTGAGCGTCGAGGTA
CTTTTCTCACATctacgagtcccaggtaggatCACAAAAACGCAAAAGTA
AAAAAGGAAGTCCCtggtagggtacctttttgggggaatttgggaaaaaa
gagGAAGATTTTGtgaaacttttcgaatttaagcCATCATTCagggtcat
ttttttcaaaaaacgatTCCCACGTAGAGGGTTCATTTTTTCGGACCTCT
GTGTCACACCCCTTCGGTTGGAAAGGGTAGTATCCCCTGGGATTCTAACA
CCCGTAATGATTTCTTAAATTAAAAAGTTGTTCAgatttttggtcttttt
ttaaaagtatttctTGTGGtgagttttttgttgtttttttttcatagtgG
ATCACATGCGTCTTGGACACGGTGGCAATCAACTGgtcaacaaaaccaaa
cataaATTATTTCTGACTGATGGATTGGCAGAAAAATTGACTGGATTCTG
TTTGTATTTCGCTAAGatcaacaaaacaaaagaaatcactGCACAAAATA
TACATAATGTAAGTAAGTTGGATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027308XLOC_027308Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043624-exon-sc0004401-1491911889:2858..3035TCONS_00043624-exon-sc0004401-1491911889:2858..3035Clytia hemisphaericaexon
TCONS_00043624-exon-sc0004401-1510915933:2858..3035TCONS_00043624-exon-sc0004401-1510915933:2858..3035Clytia hemisphaericaexon
TCONS_00043624-exon-sc0004401-1575043694:2858..3035TCONS_00043624-exon-sc0004401-1575043694:2858..3035Clytia hemisphaericaexon
TCONS_00043624-exon-sc0004401-1491911889:3588..3722TCONS_00043624-exon-sc0004401-1491911889:3588..3722Clytia hemisphaericaexon
TCONS_00043624-exon-sc0004401-1510915933:3588..3722TCONS_00043624-exon-sc0004401-1510915933:3588..3722Clytia hemisphaericaexon
TCONS_00043624-exon-sc0004401-1575043694:3588..3722TCONS_00043624-exon-sc0004401-1575043694:3588..3722Clytia hemisphaericaexon
TCONS_00043624-exon-sc0004401-1491911889:4203..4293TCONS_00043624-exon-sc0004401-1491911889:4203..4293Clytia hemisphaericaexon
TCONS_00043624-exon-sc0004401-1510915933:4203..4293TCONS_00043624-exon-sc0004401-1510915933:4203..4293Clytia hemisphaericaexon
TCONS_00043624-exon-sc0004401-1575043694:4203..4293TCONS_00043624-exon-sc0004401-1575043694:4203..4293Clytia hemisphaericaexon
TCONS_00043624-exon-sc0004401-1491911889:5005..5183TCONS_00043624-exon-sc0004401-1491911889:5005..5183Clytia hemisphaericaexon
TCONS_00043624-exon-sc0004401-1510915933:5005..5183TCONS_00043624-exon-sc0004401-1510915933:5005..5183Clytia hemisphaericaexon
TCONS_00043624-exon-sc0004401-1575043694:5005..5183TCONS_00043624-exon-sc0004401-1575043694:5005..5183Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004401supercontigsc0004401:2858..5183 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.247117	0	0	5.68898	7.79963	3.25802	5.09048	0	1.58707	3.47089	0.00133204	0.337073	0	0.143896	0	0.1441	0	0	0	0	0.00272867	0.21753	0	0	2.47617	0	0.205147	0	0
Blast
[Close]
BLAST of TCONS_00043624 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 3.321e-16
Identity = 47/118 (39.83%), Postives = 68/118 (57.63%), Query Frame = 2 
Query:  218 LDARHEYLLGNISDALNVDYNEIVEHIIEGTQIETITSFFRENGSRSSLIFFYQQMEATNDGVDHMRLGH-GGNQLVNK--TKHKLFLTDGLAEKLTGFCLYFAKINKTKEITAQNIH 562
            LDARH YL   ++  L+++  E+ + I+EG QIE I   F   G R  L+F+YQ +E    G    +LG  GG  LV+    K K+F+T+G    LTG C++F + + +K IT  NIH
Sbjct:   33 LDARHNYLFAIVASCLDLNKTEVEDAILEGNQIERIDQLFAVGGLR-HLMFYYQDVEEAETG----QLGSLGGVNLVSGKIKKPKVFVTEGNDVALTGVCVFFIRTDPSKAITPDNIH 145
The following BLAST results are available for this feature:
BLAST of TCONS_00043624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH53.321e-1639.83Dynein heavy chain 5, axonemal OS=Homo sapiens GN=... [more]
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