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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00043456 ID=TCONS_00043456|Name=TCONS_00043456|organism=Clytia hemisphaerica|type=transcript|length=1148bp
aCGCCATCCAAAAATGGATGACGTCATCCCATAATTTCTACCTGCCGGAA
AATTTGGTGAAACGTATGGTCTACAATACATAATCTCAGAATCGAATGGG
TTGAGATATTTAGGTTATGTTTTCAGAAGAAGTTAATGAGCTACTCTTCC
AAATAAATTCcgagtttttattttgaaaaaagattttatttttaaaatca
aagcTGAGCATgagcaaaatttccaaaaattgatgacgtcatagatGATG
ACGtcgttatttttcaattttttttaaaaaaacatgttttaattAGGGTT
GTTGACACCTAACATCTGTCAAAGATTGAGTGTAATTGGGTAAGCAGCTC
AAAAGTTATGAGCATTTAAAGTCTTTGAGTTTTAAGGGATTTTAGCTCCC
TATAAGAATATGAACTTGAAGTTTTCCATAGGGCAAGGCTAATTTCATTA
GTTGTTTTTACGGTCCTgccttaaaatctaaaaaactaatcaaaatgaaa
tgaattttggTAATCTATAATTTGgtaataattatttttactgGTTGCTG
ACTGTCTACTATTTCAAAATTATGGTAGATTGTCCAAGCTCCCGAGAATT
TTACATCCAAtgcttttcatttctttattatttACCAATTCACTCTTTCT
GTGTCTTATTGATAATAATTTGCATTTTTGTCAGAATTTGCTAATTTTGC
TgccattttactttttcattttcattcgtTTTTTTTCAGTTACTACCAAT
GCTTGGAAACCAATAAAGTTACCGGAAAGACATTTATTTGTAGAACCAAC
TGCGGCTACTAGTACACTGGTCCAGAAAATCGAATGAAGATcatcttttt
atattttggaaattatATCATTAGTAGATTTAGAAATGTCTTagttttta
ttgtttaaaataaatGTAAAAAGCTTTAATTCTTTGTGAACGTTTTTTCT
AAACAATAAAAATACCGTTTTGAATTCATACTAAATATACGACGTGGAGT
AATGTGTTGGAACATGACATCATTACTTTGAGTTCGTCAAAACATCATAC
GAAAATCTCTCTTGTGACGACAAATCCGCTAGAACAACGCTCGCTCATAT
AACTTTAGcatcattttacaaaaaaaattataactttTAGTAGGAGGC Run BLAST on NCBI transcript from alignment at sc0004237:5004..7024- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00043456 ID=TCONS_00043456|Name=TCONS_00043456|organism=Clytia hemisphaerica|type=transcript|length=2021bp|location=Sequence derived from alignment at sc0004237:5004..7024- (Clytia hemisphaerica)
ACGCCATCCAAAAATGGATGACGTCATCCCATAATTTCTACCTGCCGGAA
AATTTGGTGAAACGTATGGTCTACAATACATAATCTCAGAATCGAATGGG
TTGAGATATTTAGGTTATGTTTTCAGAAGAAGTTAATGAGCTACTCTTCC
AAATAAATTCCGAGTTTTTATTTTGAAAAAAGATTTTATTTTTAAAATCA
AAGCTGAGCATGAGCAAAATTTCCAAAAATTGATGACGTCATAGATGATG
ACGTCGTTATTTTTCAATTTTTTTTAAAAAAACATGTTTTAATTAGGGTT
GTTGACACCTAACATCTGTCAAAGATTGAGTGTAATTGGGTAAGCAGCTC
AAAAGTTATGAGCATTTAAAGTCTTTGAGTTTTAAGGGATTTTAGCTCCC
TATAAGAATATGAACTTGAAGTTTTCCATAGGGCAAGGCTAATTTCATTA
GTTGTTTTTACGGTCCTGCCTTAAAATCTAAAAAACTAATCAAAATGAAA
TGAATTTTGGTAATCTATAATTTGGTAATAATTATTTTTACTGGTTGCTG
ACTGTCTACTATTTCAAAATTATGGTAGATTGTCCAAGCTCCCGAGAATT
TTACATCCAATGCTTTTCATTTCTTTATTATTTACCAATTCACTCTTTCT
GTGTCTTATTGATAATAATTTGCATTTTTGTCAGAATTTGCTAATTTTGC
TGCCATTTTACTTTTTCATTTTCATTCGTTTTTTTTCAGTTACTACCAAT
GCTTGGAAACCAATAAAGTTACCGGAAAGTAAGTCAATTCTTTTTCAAAT
TATTATACCTTAAAAAAGAAGAATTTCGAAATGCAAATGCCGTTTTCATC
AGTTCACGTAAAGAAAGCATAACTACTCTAACCTCCCCGTGACCAATGAT
ACACACATTATGCAATATATTGAGTCATTACGTTTTTCTCAGTATGTTTC
TTTTTCAAGAAATATGAGTGGTATGGTATGTGATATCTATCATATGTGGC
ATATCTAAGGAATTATAGAAGGAATTTGAAGTTGATTCATAATACTTATC
ATTTTAATCGATCTTCCTTAATAAAAAAATGCATTCGCTTTTTATACTAA
AGGATGCTCATAGCTTCCCTTTAAGACAAATCGGTGCTCAATTTTTATCA
AGGACGATTAATTTATTATGATAATTCAATTTGGATTTTTCTAAGGTCAA
GAATAGTTTAAATAAAAAGGGTGGTCCGAAATTTTCAAAATATAGTAAAC
GAGGGGGGGGGTCGAAAAGATTTTTTGTTTGGTTCAGATGATCATGCTTT
TTTACTGTGTAAGGAGATTTTTCTTTGGATAGTGAGCTAAATATTCGGGA
ATTTTCTTCAAAGACATCAAAAAAGAACAAAATAAGCCCCAGAATGATGG
AAATGGAGAGACTTTTGGTTGACATCTAAAATTATTTTTGTCAAAATTGA
TAAAGGGTCTGAAATTATTTCGAAAATTAATAAGTAGGTGGAACACTTAT
TCGGGAGCCTAGAGTACATCTTTATTAAGGCTGCTTGACCATAAGACTCT
TATCTATTCTTTGAACTACGAAACCAGCTTTTAACTCCTTCTAGCTCTAG
AAATATAACTGATGTTTAAAGTTTTGAAATTTTATTGCTTGTCTTTTACA
GGACATTTATTTGTAGAACCAACTGCGGCTACTAGTACACTGGTCCAGAA
AATCGAATGAAGATCATCTTTTTATATTTTGGAAATTATATCATTAGTAG
ATTTAGAAATGTCTTAGTTTTTATTGTTTAAAATAAATGTAAAAAGCTTT
AATTCTTTGTGAACGTTTTTTCTAAACAATAAAAATACCGTTTTGAATTC
ATACTAAATATACGACGTGGAGTAATGTGTTGGAACATGACATCATTACT
TTGAGTTCGTCAAAACATCATACGAAAATCTCTCTTGTGACGACAAATCC
GCTAGAACAACGCTCGCTCATATAACTTTAGCATCATTTTACAAAAAAAA
TTATAACTTTTAGTAGGAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00043456-exon-sc0004237-1575043694:6247..7024 | TCONS_00043456-exon-sc0004237-1575043694:6247..7024 | Clytia hemisphaerica | exon |
| TCONS_00043456-exon-sc0004237-1575043694:5004..5373 | TCONS_00043456-exon-sc0004237-1575043694:5004..5373 | Clytia hemisphaerica | exon |
| TCONS_00043456-exon-sc0004237-1510915933:6247..7024 | TCONS_00043456-exon-sc0004237-1510915933:6247..7024 | Clytia hemisphaerica | exon |
| TCONS_00043456-exon-sc0004237-1510915933:5004..5373 | TCONS_00043456-exon-sc0004237-1510915933:5004..5373 | Clytia hemisphaerica | exon |
| TCONS_00043456-exon-sc0004237-1491911889:6247..7024 | TCONS_00043456-exon-sc0004237-1491911889:6247..7024 | Clytia hemisphaerica | exon |
| TCONS_00043456-exon-sc0004237-1491911889:5004..5373 | TCONS_00043456-exon-sc0004237-1491911889:5004..5373 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0004237 | supercontig | sc0004237:5004..7024 - |
Blast
The following BLAST results are available for this feature:
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