TCONS_00043391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043391
Unique NameTCONS_00043391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043391 ID=TCONS_00043391|Name=TCONS_00043391|organism=Clytia hemisphaerica|type=transcript|length=273bp
CTACACTCACGCCCGTTCAAAGTAAAAACATTCGCCCTTACTAGGTTCCA
GctccttttttgattttatcaaacGCACATAAACAACAAAGCAGTCTTCT
AGAATTTGGCGGCAAGCAAGATGGCGGAAAGTTCCCATTGAACTTAAGGT
TTGAAGCAGTTGAAGTAACACGAAGGACTTTATTGTCAAGAATAACAGAA
TTTACTCCAAGCTaacacTAAAGTGATGTTGCGTGTACATGGACATTGTT
TGAATTTCAAGGAAATTAACCCT
Run BLAST on NCBI

transcript from alignment at sc0004184:522..2774+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043391 ID=TCONS_00043391|Name=TCONS_00043391|organism=Clytia hemisphaerica|type=transcript|length=2253bp|location=Sequence derived from alignment at sc0004184:522..2774+ (Clytia hemisphaerica)
CTACACTCACGCCCGTTCAAAGTAAAAACATTCGCCCTTACTAGGTTCCA
GctccttttttgattttatcaaacGCACATAAACAACAAAGCAGTCTTCT
AGAATTTGGCGGCAAGCAAGATGGCGGAAAGTTCCCATTGAACTTAAGGT
TTGAAGCAGTTGAAGTAACACGAAGGACTTTATTGTCAAGAATAACAGAA
TTTACTCCAAGCTaagtatattttattatttctttacAACTACTATTGTT
TTTTTGGGATTAAAGAAAGTTGTTAAAAGATGATAAGAAAGATTTAAGGC
AGAAAAAAGGTATactgtttgaaatgttttatgGCTTTTGATGCATTTTT
TTTCAAGGACGATGTTGATATTATTTTATTGCTGTACATTATATGCTGCA
TTGTATagtaaagagaaaagaaagCTTGAATGGTTGAAttacagattttg
aaaataatttttcagattACTGTAGCTAGCTAGAGGATTCTGTTTTTATG
TTGTGTTGTGTTTGTATTCTCTTTATTTTAGTTTTAcacatattttgatt
ttgtccATATTATAGTAAAATTCTTTTAATGTAtgtaaatttttgaacaa
atatttcCACTTACGACTTATGGCAAatgcaaaaactaaatttgagtCGA
TTTGTTGATTAGAGATGGATCATTATTTCTCCCTTAGATCTTTTTGAAAC
ACTGTAATATCTGGCATATGTGTAGTCATCAAGCATGCCAAACACATATC
AGCATTAGCCATTCAATAGAGTGTCAAAATGTGGATANNNNNNNNNNNNN
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NNNNNTGAAGTTCTTTTGAATCAGATGTGCATGTTGTTAGTCATTTTAAT
GCCAAAACAACATCAACAGTCAAAACATTCTAAACCATGTTTAAACTGTA
GAAATTATGATTCAATTggactttcatttttttgttttgttttttgtgat
TACTTTCAAAGCTTCTCAAttgtcttaaaaaaaatggaaagcATAATGCT
AAAGTAGTTTAAAAAAGAAAGCCTTGTGTACTACAACTTCTgaataatat
ttttgtaaactaAATAATTTCGTTTGAGATAAATTTGTTCTGCAAAGTTT
TTTTGTGCATGAAAGTTATCTGGAGGTGTTGAGATTTTCTCTACTAggca
agttaaattttttttagataaatctTTAATTATAAGTGCAATTTTATGCT
AATCAGTAACCAGTCAGTTAGCCATGGGCAGATATATTTTGGATTGCATT
TTCCATTATCCTGTTTAGCCTGAATTTCTTGgttgtaaactttttttgat
cttTCCCCTATTAACTCTGCCTAAATCCTTGTTGTAAAGCCATGGCATGG
CCAAAAAATCTATAGCTTCACCCAACAATTGAATTAACACTTTTTGTTAT
TAATGCTAATAATTATAaagtatttatatttattttttattttagcacTA
AAGTGATGTTGCGTGTACATGGACATTGTTTGAATTTCAAGGAAATTAAC
CCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027094XLOC_027094Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043391-exon-sc0004184-1491911889:522..736TCONS_00043391-exon-sc0004184-1491911889:522..736Clytia hemisphaericaexon
TCONS_00043391-exon-sc0004184-1510915933:522..736TCONS_00043391-exon-sc0004184-1510915933:522..736Clytia hemisphaericaexon
TCONS_00043391-exon-sc0004184-1575043694:522..736TCONS_00043391-exon-sc0004184-1575043694:522..736Clytia hemisphaericaexon
TCONS_00043391-exon-sc0004184-1491911889:2717..2774TCONS_00043391-exon-sc0004184-1491911889:2717..2774Clytia hemisphaericaexon
TCONS_00043391-exon-sc0004184-1510915933:2717..2774TCONS_00043391-exon-sc0004184-1510915933:2717..2774Clytia hemisphaericaexon
TCONS_00043391-exon-sc0004184-1575043694:2717..2774TCONS_00043391-exon-sc0004184-1575043694:2717..2774Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004184supercontigsc0004184:522..2774 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.407277	0	0	0	3.0825	3.13884	1.72186	0	0.488117	1.86385	0	1.0489	0	0	0	1.5233	0	1.16343	0.792854	1.85664	0	0	0	0	0.309399	0	0.830597	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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