TCONS_00043155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043155
Unique NameTCONS_00043155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length291

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043155 ID=TCONS_00043155|Name=TCONS_00043155|organism=Clytia hemisphaerica|type=transcript|length=291bp
CCTAGTTCATCAGAAATCCCTCAATACCGTTTACCATACGATGCTGTCAG
CTTTGAGATTGACCAAATGAAGGATCTAGGTGTTAAGGTTGAATTAAACA
GACCGCTATCCAAGAATGCAGGCACCACCATTGAATCATTAAGAAACGAA
GGATACAAAGCTATTTATATTGGTATTGgTCTACCCGAACCAAAGATCGC
TAAACAGTTCGAAGGATTGACGGTCGACCATGGGTTTTACACTTCTAAAA
ACTTTTTACCTCTCGTATCGAAAGGCAGCAAAGCAGGTACG
Run BLAST on NCBI

transcript from alignment at sc0003962:7235..8830-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043155 ID=TCONS_00043155|Name=TCONS_00043155|organism=Clytia hemisphaerica|type=transcript|length=1596bp|location=Sequence derived from alignment at sc0003962:7235..8830- (Clytia hemisphaerica)
CCTAGTTCATCAGAAATCCCTCAATACCGTTTACCATACGATGCTGTCAG
CTTTGAGATTGACCAAATGAAGGATCTAGGTGTTAAGGTCAGTTTTGTTT
TTCTGGAAGTAGTAAGCCTAAAAACATTGACAATATTATGGTAAGTGTTT
AAAGTTTTCTGTCTCAGTGAAGTATATACCCTATTATGAAGACGCTTTTG
AAATGTTCTTCCTGCTCCGCTGTTTGAATAAAAAATAGAATACACGTTTT
TTTTTTTTAAGAAACTAGTTTTACCAAGCAGCCTCAATATTTCTTTAGAA
ATCGGCCTTTTGAGCCTTAAATGTTTCTTACATGTTTCTAAACTTTTTGA
CATAATCAGCCTTATGAAAGGCTGGATTGGAAGGTTCTTAAAAAAACGAA
TTAAAAAATGTTATTTTCTCATTCTCAGCCTCGGCATGTTTCTTAGATGT
TTTTTAGTTTTTAGACATTCTGAGCCTCATGTTTCTTAAAAGTGTGTTTC
TTAAAAAAAACAAAAATGTGTAGCCTAATATTATGGAGGGAAATGTTGTA
GTATTTTCTGTTAAATTAGTGTTTTATATATAATTGTTCCAGGGGTAAAA
GACTGCAAATTTTGCCATTTCCAGGAGGGTATCCACACATTTCCAAGAAA
TGTTTTTTGACTCATGAAAAGGTTCGTCCACCCCCTGTATGGAAATTTAA
TGAGATAGCCCATTCCGCTTCACAACAAAAGCTCCCCCAAAGTGTGGTAG
TAATAACAGGAAAAATCTGCTTGTCCTTCTATTCTTTCTATGTATAGTCA
AGAATAGCGCTCCGCATCGCATACGTCATAATTATTACTTTTCACTTTTT
TTGACATTTGTACGAGTTGCAATCCCACAATTCAACGCGGCTCAATTAAA
GATAGGTGCAAGGGGGGTGCAAGCTGTTATATATCTTTTGTCAAACGATG
CAATTAACGTGCAAAAGAGATTAACGCAAAGGTTGATGGGATTGGAACTC
GTACAAACACATCGAGAGTAATGATTATGTCCCGATTTAAAAATTATATT
ACCTATGAACGTTTGTAGAACATGCCTTTATTATAATTTTCACCTGACCT
TTTCTAGGTTGAATTAAACAGACCGCTATCCAAGAATGCAGGCACCACCA
TTGAATCATTAAGAAACGAAGGATACAAAGCTATTTATATTGGTATTGGT
AAGTCTGCAATCATGGTTGAAATATATTGAGAACTCCGGATAGTTTAACA
TTTTTCACTTTGAGTTATGGAGACTCGTATAAAATAATTAAAATGGAATA
TCATGCATGCCTCTTAAACTCGACCTAGTTTCTTATAACAAGTTTCTTCA
ACTCGAACAAATTTTAGTTTCAATAAGTGTATGTGCTCGAGTTATGGAGA
CTCTACTGTATATAGTGTATAAAAATTTTGAAAATTTTCTTTTTCTTTAA
TTGGCTTTGTTTGTCATTGTTTCATTTTTTTAGGTCTACCCGAACCAAAG
ATCGCTAAACAGTTCGAAGGATTGACGGTCGACCATGGGTTTTACACTTC
TAAAAACTTTTTACCTCTCGTATCGAAAGGCAGCAAAGCAGGTACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026877XLOC_026877Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043155-exon-sc0003962-1575043694:8744..8830TCONS_00043155-exon-sc0003962-1575043694:8744..8830Clytia hemisphaericaexon
TCONS_00043155-exon-sc0003962-1575043694:7633..7723TCONS_00043155-exon-sc0003962-1575043694:7633..7723Clytia hemisphaericaexon
TCONS_00043155-exon-sc0003962-1575043694:7235..7347TCONS_00043155-exon-sc0003962-1575043694:7235..7347Clytia hemisphaericaexon
TCONS_00043155-exon-sc0003962-1510915933:8744..8830TCONS_00043155-exon-sc0003962-1510915933:8744..8830Clytia hemisphaericaexon
TCONS_00043155-exon-sc0003962-1510915933:7633..7723TCONS_00043155-exon-sc0003962-1510915933:7633..7723Clytia hemisphaericaexon
TCONS_00043155-exon-sc0003962-1510915933:7235..7347TCONS_00043155-exon-sc0003962-1510915933:7235..7347Clytia hemisphaericaexon
TCONS_00043155-exon-sc0003962-1491911889:8744..8830TCONS_00043155-exon-sc0003962-1491911889:8744..8830Clytia hemisphaericaexon
TCONS_00043155-exon-sc0003962-1491911889:7633..7723TCONS_00043155-exon-sc0003962-1491911889:7633..7723Clytia hemisphaericaexon
TCONS_00043155-exon-sc0003962-1491911889:7235..7347TCONS_00043155-exon-sc0003962-1491911889:7235..7347Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003962supercontigsc0003962:7235..8830 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.6743	13.8722	9.76181	5.73024	8.54847	6.33333	10.5499	8.33288	15.8288	23.731	17.2175	12.8649	73.8833	77.141	60.0836	81.7916	63.7869	62.2929	46.0376	59.5089	33.3434	39.6429	21.7478	46.2842	52.9344	48.5791	134.179	156.447	38.2772	46.7981
Blast
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BLAST of TCONS_00043155 vs. Swiss-Prot (Human)
Match: DPYD (Dihydropyrimidine dehydrogenase [NADP(+)] OS=Homo sapiens GN=DPYD PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 6.326e-34
Identity = 61/95 (64.21%), Postives = 75/95 (78.95%), Query Frame = 1 
Query:    4 SSSEIPQYRLPYDAVSFEIDQMKDLGVKVELNRPLSKNAGTTIESLRNEGYKAIYIGIGLPEPKIAKQFEGLTVDHGFYTSKNFLPLVSKGSKAG 288
            S+SEIPQ+RLPYD V+FEI+ MKDLGVK+   + LS N   T+ +L+ +GYKA +IGIGLPEP     F+GLT D GFYTSK+FLPLV+KGSKAG
Sbjct:  227 STSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSVNE-MTLSTLKEKGYKAAFIGIGLPEPNKDAIFQGLTQDQGFYTSKDFLPLVAKGSKAG 320
The following BLAST results are available for this feature:
BLAST of TCONS_00043155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPYD6.326e-3464.21Dihydropyrimidine dehydrogenase [NADP(+)] OS=Homo ... [more]
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