TCONS_00043122 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043122
Unique NameTCONS_00043122
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043122 ID=TCONS_00043122|Name=TCONS_00043122|organism=Clytia hemisphaerica|type=transcript|length=511bp
CCGGTTTCCTCAAGCCATCAAGTTCAAGTCACCAAAGATGAGAAAGATGG
AAGCTGGTGTCTTCTTGACATGTAATGCGATgccaaaatttgataaagaa
cAAGAGGCTGTGGAAAGGAGATTGGCAAGGTTTCATACCCGACCACTTGA
AAATATAGACCCCTCTGCACCATCTTGGATTAAGTCTAATGCGATGAACT
GCCTAACATACTTAGTAAACCTAATCAATTCAAACCTCGACGTCTTGGAC
GAAGATGATCTTTCTTACACTTTACCTAAAGACGTAAGATGTGCAAACAC
CATGCTGATGGACAAGATAGACGAAAAGAAACTTGATGCTATTCAAAAGT
GCGTTGTCGACAAAGATAAGTCCGTTGAACTTGCCCAACCATTGACTGGA
TATGACATCTTTCGAATTGAACAACCAGGCGATGACGatcaATCAAAACA
ACCTGACGTGGATAATGAAAGTGATGTGGACATGGCAAAGTCTATCACTT
TGAAAACGAAT
Run BLAST on NCBI

protein sequence of TCONS_00043122-protein

>TCONS_00043122-protein ID=TCONS_00043122-protein|Name=TCONS_00043122-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
RFPQAIKFKSPKMRKMEAGVFLTCNAMPKFDKEQEAVERRLARFHTRPLE
NIDPSAPSWIKSNAMNCLTYLVNLINSNLDVLDEDDLSYTLPKDVRCANT
MLMDKIDEKKLDAIQKCVVDKDKSVELAQPLTGYDIFRIEQPGDDDQSKQ
PDVDNESDVDMAKSITLKTN
Run BLAST on NCBI

transcript from alignment at sc0003938:7999..8637+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043122 ID=TCONS_00043122|Name=TCONS_00043122|organism=Clytia hemisphaerica|type=transcript|length=639bp|location=Sequence derived from alignment at sc0003938:7999..8637+ (Clytia hemisphaerica)
CCGGTTTCCTCAAGCCATCAAGTTCAAGTCACCAAAGATGAGAAAGATGG
AAGCTGGTGTCTTCTTGACATGTAATGCGATgccaaaatttgataaagaa
cAAGAGGCTGTGGAAAGGAGATTGGCAAGGTTTCATACCCGACCACTTGA
AAATATAGACCCCTCTGCACCATCTTGGATTAAGTCTAATGCGATGAACT
GCCTAACATACTTAGTAAACCTAATCAATTCAAACCTCGACGTCTTGGAC
GAAGATGATCTTTCTTACACTTTACCTAAAGACGTAAGATGTGCAAACAC
CATGCTGATGGACAAGATAGACGAAAAGAAACTTGATGCTATTCAAAAGT
GCGTTGTCGACAAAGATAAGTCCGTTGAACTTGCCCAACCATTGACTGGA
TATGACATCTTTCGAATTGAACAACCAGGCGATGACGGTAATTGCATTTT
Ctacctttctttttattttgtattggtattttgacaaactttcaatattc
TGGGAGAAGAAAGGGAACTACTAAAGCTATAAGAAGAAACTTAAagtact
tttttttttcttcagatcaATCAAAACAACCTGACGTGGATAATGAAAGT
GATGTGGACATGGCAAAGTCTATCACTTTGAAAACGAAT

Coding sequence (CDS) from alignment at sc0003938:7999..8637+

>TCONS_00043122 ID=TCONS_00043122|Name=TCONS_00043122|organism=Clytia hemisphaerica|type=CDS|length=1020bp|location=Sequence derived from alignment at sc0003938:7999..8637+ (Clytia hemisphaerica)
CGGTTTCCTCAAGCCATCAAGTTCAAGTCACCAAAGATGAGAAAGATGGA
AGCTGGTGTCTTCTTGACATGTAATGCGATgccaaaatttgataaagaac
AAGAGGCTGTGGAAAGGAGATTGGCAAGGTTTCATACCCGACCACTTGAA
AATATAGACCCCTCTGCACCATCTTGGATTAAGTCTAATGCGATGAACTG
CCTAACATACTTAGTAAACCTAATCAATTCAAACCTCGACGTCTTGGACG
AAGATGATCTTTCTTACACTTTACCTAAAGACGTAAGATGTGCAAACACC
ATGCTGATGGACAAGATAGACGAAAAGAAACTTGATGCTATTCAAAAGTG
CGTTGTCGACAAAGATAAGTCCGTTGAACTTGCCCAACCATTGACTGGAT
ATGACATCTTTCGAATTGAACAACCAGGCGATGACGatcaATCAAAACAA
CCTGACGTGGATAATGAAAGTGATGTGGACATGGCAAAGTCTATCACTTT
GAAAACGAATCGGTTTCCTCAAGCCATCAAGTTCAAGTCACCAAAGATGA
GAAAGATGGAAGCTGGTGTCTTCTTGACATGTAATGCGATgccaaaattt
gataaagaacAAGAGGCTGTGGAAAGGAGATTGGCAAGGTTTCATACCCG
ACCACTTGAAAATATAGACCCCTCTGCACCATCTTGGATTAAGTCTAATG
CGATGAACTGCCTAACATACTTAGTAAACCTAATCAATTCAAACCTCGAC
GTCTTGGACGAAGATGATCTTTCTTACACTTTACCTAAAGACGTAAGATG
TGCAAACACCATGCTGATGGACAAGATAGACGAAAAGAAACTTGATGCTA
TTCAAAAGTGCGTTGTCGACAAAGATAAGTCCGTTGAACTTGCCCAACCA
TTGACTGGATATGACATCTTTCGAATTGAACAACCAGGCGATGACGatca
ATCAAAACAACCTGACGTGGATAATGAAAGTGATGTGGACATGGCAAAGT
CTATCACTTTGAAAACGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026851XLOC_026851Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043122-proteinTCONS_00043122-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043122-exon-sc0003938-1491911889:7999..8435TCONS_00043122-exon-sc0003938-1491911889:7999..8435Clytia hemisphaericaexon
TCONS_00043122-exon-sc0003938-1510915933:7999..8435TCONS_00043122-exon-sc0003938-1510915933:7999..8435Clytia hemisphaericaexon
TCONS_00043122-exon-sc0003938-1575043694:7999..8435TCONS_00043122-exon-sc0003938-1575043694:7999..8435Clytia hemisphaericaexon
TCONS_00043122-exon-sc0003938-1491911889:8564..8637TCONS_00043122-exon-sc0003938-1491911889:8564..8637Clytia hemisphaericaexon
TCONS_00043122-exon-sc0003938-1510915933:8564..8637TCONS_00043122-exon-sc0003938-1510915933:8564..8637Clytia hemisphaericaexon
TCONS_00043122-exon-sc0003938-1575043694:8564..8637TCONS_00043122-exon-sc0003938-1575043694:8564..8637Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003938supercontigsc0003938:7999..8637 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.44002	1.61298	0.133012	0.049434	0.0601812	0.259116	0	0.346994	0	0.473145	0	0.436813	0.244432	0.393015	0	0.380647	0.18399	0.52695	0.133598	0.414967	0.708452	0.87377	1.30481	0.634958	0.438056	0.484748	0.0606226	0.813745	0.883756	1.28417
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043122 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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