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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042980 ID=TCONS_00042980|Name=TCONS_00042980|organism=Clytia hemisphaerica|type=transcript|length=929bp
GGAAACAATGACTAAGGCACATTTAATGCCACTTGCTGGGGATGTCATCC
CATATCTATTGCGACTACTATTTTCACTACAAAGACTGGTAGGTGCCTCC
CTCCTTGAACCAAAGGAGGGGTCAAAACGAATCAAGAAGAATGGACTGAA
GCCATTGCCAGAAAACATTCTGGTAGCTATAAGAgCATTTGTTATCAGCA
ATAAACTTAGACCCAAGAAGGTCTacctaaagaaaaaaaagaaaagtaat
gaCGAAGGAGAGGTTGAAGTAGAGGAAGAAGAGGATAAGGAGATCAAGAC
GGATAAAAAGGGGGGGAAGTATATTATTAATCTGGTTAAGCCAGACAATA
GTTCTTGTAATCAATACATCAGGAGAACATTTTATTCGGCTTGCCGTTAT
GCAGGCCACCCTAACCTGGTCTGGCCTGATAAGAAAGAGGATGGTAGGAT
GTGATTTTTTGGGAATCTTGTATTggatacattaaaggaagaaattttgg
tgggaatttaatttggcggatggctgaaaaagttttttcagagggaattt
aatttggcggaacggtactgaaattaattttggcggcaATTTAATTTGGC
CTAAATAGTGAAAATCAAACGAAATATGAGAACTCAATTAGGTGGATGAT
GGAAAAAGGGAACCTAATTCAGCAAAAACAGCcaattcccaccaaaattt
cttcctttaatgtatctCATGGTAATATTTTTGATAACGCACAGTTTTTT
TGATTTAATAACATTTGAATCATTTCCAATGggtaaatttaaactttttt
accatttttatgaaaaaagtgaTTGTGAAAGGATTTGAGAGATAGAGAAA
ATTCTGATTTCTTTTGCTGTAGATATTGGTTTAACATttatcattgatta
ttttaattttcatttcacCTTCAAACTTA Run BLAST on NCBI protein sequence of TCONS_00042980-protein >TCONS_00042980-protein ID=TCONS_00042980-protein|Name=TCONS_00042980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
ETMTKAHLMPLAGDVIPYLLRLLFSLQRLVGASLLEPKEGSKRIKKNGLK
PLPENILVAIRAFVISNKLRPKKVYLKKKKKSNDEGEVEVEEEEDKEIKT
DKKGGKYIINLVKPDNSSCNQYIRRTFYSACRYAGHPNLVWPDKKEDGRM Run BLAST on NCBI transcript from alignment at sc0003832:6099..7536+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042980 ID=TCONS_00042980|Name=TCONS_00042980|organism=Clytia hemisphaerica|type=transcript|length=1438bp|location=Sequence derived from alignment at sc0003832:6099..7536+ (Clytia hemisphaerica)
GGAAACAATGACTAAGGCACATTTAATGCCACTTGCTGGGGATGTCATCC
CATATCTATTGCGACTGTTAGTCAATCAGTTtgagtctagaaaaaaattc
agaGAGAAAAATATCCATCATTCCCaatgaattttcaaacttttctttat
gatcaaaattttttaatgagcTTGGGCCTCAAAATGACCCCAAGATATAC
AAAAAAAGAAAGCAATCAAGAANATTTTTTAATGAGCAACTAAGTTGGTT
TGCTAAGAGCTCGGGCCTCAAAATGACCCCAAGATATACAAAAAAAGAAA
GCAATCAAGAATTTCTAAATGTAATAAGTGGTATTTTTGGCATTTGGTAT
CAAAAAGCATATCTGAGGTATTTCAATGCAAGATTTGATATATTAGTTAC
TTCAggttttttgtatatatttcaGACTATTTTCACTACAAAGACTGGTA
GGTGCCTCCCTCCTTGAACCAAAGGAGGGGTCAAAACGAATCAAGAAGAA
TGGACTGAAGCCATTGCCAGAAAACATTCTGGTAGCTATAAGAggtaaaa
tttgttttccttttgaaaaaatataagattgatgtttttgaaaagtattt
ttttttccatACAGTGAAATGGCTTACAATTCTATCGTGGAAGTATAATT
CTACTGATAAAGGAATTTAAGATATTTGACTTACATTTTTCTAGCATTTG
TTATCAGCAATAAACTTAGACCCAAGAAGGTCTacctaaagaaaaaaaag
aaaagtaatgaCGAAGGAGAGGTTGAAGTAGAGGAAGAAGAGGATAAGGA
GATCAAGACGGATAAAAAGGGGGGGAAGTATATTATTAATCTGGTTAAGC
CAGACAATAGTTCTTGTAATCAATACATCAGGAGAACATTTTATTCGGCT
TGCCGTTATGCAGGCCACCCTAACCTGGTCTGGCCTGATAAGAAAGAGGA
TGGTAGGATGTGATTTTTTGGGAATCTTGTATTggatacattaaaggaag
aaattttggtgggaatttaatttggcggatggctgaaaaagttttttcag
agggaatttaatttggcggaacggtactgaaattaattttggcggcaATT
TAATTTGGCCTAAATAGTGAAAATCAAACGAAATATGAGAACTCAATTAG
GTGGATGATGGAAAAAGGGAACCTAATTCAGCAAAAACAGCcaattccca
ccaaaatttcttcctttaatgtatctCATGGTAATATTTTTGATAACGCA
CAGTTTTTTTGATTTAATAACATTTGAATCATTTCCAATGggtaaattta
aacttttttaccatttttatgaaaaaagtgaTTGTGAAAGGATTTGAGAG
ATAGAGAAAATTCTGATTTCTTTTGCTGTAGATATTGGTTTAACATttat
cattgattattttaattttcatttcacCTTCAAACTTA Coding sequence (CDS) from alignment at sc0003832:6099..7536+ >TCONS_00042980 ID=TCONS_00042980|Name=TCONS_00042980|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at sc0003832:6099..7536+ (Clytia hemisphaerica)
GAAACAATGACTAAGGCACATTTAATGCCACTTGCTGGGGATGTCATCCC
ATATCTATTGCGACTACTATTTTCACTACAAAGACTGGTAGGTGCCTCCC
TCCTTGAACCAAAGGAGGGGTCAAAACGAATCAAGAAGAATGGACTGAAG
CCATTGCCAGAAAACATTCTGGTAGCTATAAGAgCATTTGTTATCAGCAA
TAAACTTAGACCCAAGAAGGTCTacctaaagaaaaaaaagaaaagtaatg
aCGAAGGAGAGGTTGAAGTAGAGGAAGAAGAGGATAAGGAGATCAAGACG
GATAAAAAGGGGGGGAAGTATATTATTAATCTGGTTAAGCCAGACAATAG
TTCTTGTAATCAATACATCAGGAGAACATTTTATTCGGCTTGCCGTTATG
CAGGCCACCCTAACCTGGTCTGGCCTGATAAGAAAGAGGATGGTAGGATG
TGAGAAACAATGACTAAGGCACATTTAATGCCACTTGCTGGGGATGTCAT
CCCATATCTATTGCGACTACTATTTTCACTACAAAGACTGGTAGGTGCCT
CCCTCCTTGAACCAAAGGAGGGGTCAAAACGAATCAAGAAGAATGGACTG
AAGCCATTGCCAGAAAACATTCTGGTAGCTATAAGAgCATTTGTTATCAG
CAATAAACTTAGACCCAAGAAGGTCTacctaaagaaaaaaaagaaaagta
atgaCGAAGGAGAGGTTGAAGTAGAGGAAGAAGAGGATAAGGAGATCAAG
ACGGATAAAAAGGGGGGGAAGTATATTATTAATCTGGTTAAGCCAGACAA
TAGTTCTTGTAATCAATACATCAGGAGAACATTTTATTCGGCTTGCCGTT
ATGCAGGCCACCCTAACCTGGTCTGGCCTGATAAGAAAGAGGATGGTAGG
ATGTGAGAAACAATGACTAAGGCACATTTAATGCCACTTGCTGGGGATGT
CATCCCATATCTATTGCGACTACTATTTTCACTACAAAGACTGGTAGGTG
CCTCCCTCCTTGAACCAAAGGAGGGGTCAAAACGAATCAAGAAGAATGGA
CTGAAGCCATTGCCAGAAAACATTCTGGTAGCTATAAGAgCATTTGTTAT
CAGCAATAAACTTAGACCCAAGAAGGTCTacctaaagaaaaaaaagaaaa
gtaatgaCGAAGGAGAGGTTGAAGTAGAGGAAGAAGAGGATAAGGAGATC
AAGACGGATAAAAAGGGGGGGAAGTATATTATTAATCTGGTTAAGCCAGA
CAATAGTTCTTGTAATCAATACATCAGGAGAACATTTTATTCGGCTTGCC
GTTATGCAGGCCACCCTAACCTGGTCTGGCCTGATAAGAAAGAGGATGGT
AGGATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042980-exon-sc0003832-1491911889:6099..6164 | TCONS_00042980-exon-sc0003832-1491911889:6099..6164 | Clytia hemisphaerica | exon |
| TCONS_00042980-exon-sc0003832-1510915933:6099..6164 | TCONS_00042980-exon-sc0003832-1510915933:6099..6164 | Clytia hemisphaerica | exon |
| TCONS_00042980-exon-sc0003832-1575043694:6099..6164 | TCONS_00042980-exon-sc0003832-1575043694:6099..6164 | Clytia hemisphaerica | exon |
| TCONS_00042980-exon-sc0003832-1491911889:6524..6642 | TCONS_00042980-exon-sc0003832-1491911889:6524..6642 | Clytia hemisphaerica | exon |
| TCONS_00042980-exon-sc0003832-1510915933:6524..6642 | TCONS_00042980-exon-sc0003832-1510915933:6524..6642 | Clytia hemisphaerica | exon |
| TCONS_00042980-exon-sc0003832-1575043694:6524..6642 | TCONS_00042980-exon-sc0003832-1575043694:6524..6642 | Clytia hemisphaerica | exon |
| TCONS_00042980-exon-sc0003832-1491911889:6793..7536 | TCONS_00042980-exon-sc0003832-1491911889:6793..7536 | Clytia hemisphaerica | exon |
| TCONS_00042980-exon-sc0003832-1510915933:6793..7536 | TCONS_00042980-exon-sc0003832-1510915933:6793..7536 | Clytia hemisphaerica | exon |
| TCONS_00042980-exon-sc0003832-1575043694:6793..7536 | TCONS_00042980-exon-sc0003832-1575043694:6793..7536 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003832 | supercontig | sc0003832:6099..7536 + |
Blast
The following BLAST results are available for this feature:
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