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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042952 ID=TCONS_00042952|Name=TCONS_00042952|organism=Clytia hemisphaerica|type=transcript|length=2492bpRun BLAST on NCBI transcript from alignment at sc0003803:2515..5006+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00042952 ID=TCONS_00042952|Name=TCONS_00042952|organism=Clytia hemisphaerica|type=transcript|length=2492bp|location=Sequence derived from alignment at sc0003803:2515..5006+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00042952 vs. Swiss-Prot (Human)
Match: ZN33B (Zinc finger protein 33B OS=Homo sapiens GN=ZNF33B PE=1 SV=2) HSP 1 Score: 263.077 bits (671), Expect = 5.446e-77 Identity = 152/287 (52.96%), Postives = 189/287 (65.85%), Query Frame = 1
Query: 673 DKPFKCQECGKSFATKRNLVRHHKTIHQGIKPFKCQECDKCFVDKTNLTSHQIAVHQLGIKAFNCQKCAKSFTMKSYLKAHQRTVHPGMKTFFCQECGKSFGHKSTLTSHQRTVHEGIKPFDCKECGNCFGQKTNLTSHQRTVHEGIKAFECQECGKCFVEKRNLTSHQRTVHEGIKPFKCQECGKSFGQKVNLTSHQGIVHEGIKPFKCQECGKSFGHKSTLTLHQRTVHEGIKPFKCQECGKCFGQKTNLTSHQRTVHQGIKAYKCHQCGKSFAKKTCLKQHQLT 1533
+K F+C ECGK+F K +L RH + +H G K F+C +C K F +K+NLT HQ + G K F C +C K+F+ KS L HQRT H G K + C CGK+F KS LT HQRT H G KP++C ECG F ++LT HQRT H G K FEC ECGK F +K +LT HQRT H G KP++C CGK+F K LT HQ I+H G+KP++C ECGK+F KS LT+HQRT H G KPF C ECGK F K+ L+ H RT H G K Y+CH+CGK F K+ L +H T
Sbjct: 326 EKHFECNECGKAFWEKSHLTRHQR-VHTGEKHFQCNQCGKTFWEKSNLTKHQRS--HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQRT-HTGQKPYECYECGKSFCMNSHLTVHQRT-HTGEKPFECLECGKSFCQKSHLTQHQRT-HIGDKPYECNACGKTFYHKSVLTRHQ-IIHTGLKPYECYECGKTFCLKSDLTIHQRT-HTGEKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRT 602 HSP 2 Score: 45.4394 bits (106), Expect = 5.446e-77 Identity = 27/53 (50.94%), Postives = 31/53 (58.49%), Query Frame = 3
Query: 1551 KAFVCQECGKCFAEKRNFTSHQRTIHQG*KNF*CQECGKCFSTKTYLKRPQRT 1709
K + C ECGK F +K T HQR IH G K + C ECGK F K+ L QRT
Sbjct: 607 KPYECNECGKTFCQKSQLTQHQR-IHIGEKPYECNECGKAFCHKSALIVHQRT 658 HSP 3 Score: 251.906 bits (642), Expect = 2.543e-71 Identity = 160/326 (49.08%), Postives = 197/326 (60.43%), Query Frame = 1
Query: 559 QNHENENVQECFEADKIENPNKDEITKSSFKEHQRT-IYDKPFKCQECGKSFATKRNLVRHHKTIHQGIKPFKCQECDKCFVDKTNLTSHQIAVHQLGIKAFNCQKCAKSFTMKSYLKAHQRTVHPGMKTFFCQECGKSFGHKSTLTSHQRTVHEGIKPFDCKECGNCFGQKTNLTSHQRTVHEGIKAFECQECGKCFVEKRNLTSHQRTVHEGIKPFKCQECGKSFGQKVNLTSHQGIVHEGIKPFKCQECGKSFGHKSTLTLHQRTVHEGIKPFKCQECGKCFGQKTNLTSHQRTVHQGIKAYKCHQCGKSFAKKTCLKQHQLT 1533
+ H E EC E K KS +HQRT I DKP++C CGK+F K L RH + IH G+KP++C EC K F K++LT HQ G K F C +C K F+ KS L H RT H G K + C ECGK F +KS LT H RT H G KP++C ECG F QK+ LT HQR +H G K +EC ECGK F K L HQRT H KP+KC ECGKSF K L H+ H G KP++C ECGKSF HKS+LT+H R H G K +C ECGK F +K++L HQR+ H G K Y+C+ C K+F++K+ L HQ T
Sbjct: 461 RTHTGEKPFECLEC------GKSFCQKSHLTQHQRTHIGDKPYECNACGKTFYHKSVLTRH-QIIHTGLKPYECYECGKTFCLKSDLTIHQRT--HTGEKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKTFCQKSQLTQHQR-IHIGEKPYECNECGKAFCHKSALIVHQRT-HTQEKPYKCNECGKSFCVKSGLILHER-KHTGEKPYECNECGKSFSHKSSLTVHHR-AHTGEKSCQCNECGKIFYRKSDLAKHQRS-HTGEKPYECNTCRKTFSQKSNLIVHQRT 770 HSP 4 Score: 243.432 bits (620), Expect = 2.661e-70 Identity = 151/286 (52.80%), Postives = 183/286 (63.99%), Query Frame = 1
Query: 676 KPFKCQECGKSFATKRNLVRHHKTIHQGIKPFKCQECDKCFVDKTNLTSHQIAVHQLGIKAFNCQKCAKSFTMKSYLKAHQRTVHPGMKTFFCQECGKSFGHKSTLTSHQRTVHEGIKPFDCKECGNCFGQKTNLTSHQRTVHEGIKAFECQECGKCFVEKRNLTSHQRTVHEGIKPFKCQECGKSFGQKVNLTSHQGIVHEGIKPFKCQECGKSFGHKSTLTLHQRTVHEGIKPFKCQECGKCFGQKTNLTSHQRTVHQGIKAYKCHQCGKSFAKKTCLKQHQLT 1533
K + C E G +F K L + K +G K F+C EC K F +K++LT HQ VH G K F C +C K+F KS L HQR+ H G K F C ECGK+F HKS LT HQRT H G KP+ C CG F QK++LT HQRT H G K +EC ECGK F +LT HQRT H G KPF+C ECGKSF QK +LT HQ H G KP++C CGK+F HKS LT HQ +H G+KP++C ECGK F K++LT HQRT H G K + C +CGK F+ K+ L QH T
Sbjct: 299 KHYDCGESGNNFRRKLCLSQLQKG-DKGEKHFECNECGKAFWEKSHLTRHQ-RVH-TGEKHFQCNQCGKTFWEKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQRT-HTGQKPYECYECGKSFCMNSHLTVHQRT-HTGEKPFECLECGKSFCQKSHLTQHQR-THIGDKPYECNACGKTFYHKSVLTRHQ-IIHTGLKPYECYECGKTFCLKSDLTIHQRT-HTGEKPFACPECGKFFSHKSTLSQHYRT 574 HSP 5 Score: 42.3578 bits (98), Expect = 2.661e-70 Identity = 25/52 (48.08%), Postives = 29/52 (55.77%), Query Frame = 3
Query: 1551 KAFVCQECGKCFAEKRNFTSHQRTIHQG*KNF*CQECGKCFSTKTYLKRPQR 1706
K + C ECGK F K T H RT H G K + C ECGK F K+ L + QR
Sbjct: 579 KPYECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKTFCQKSQLTQHQR 629 HSP 6 Score: 167.162 bits (422), Expect = 8.062e-48 Identity = 108/220 (49.09%), Postives = 136/220 (61.82%), Query Frame = 1
Query: 877 AKSFTMKSYLKAHQRTVHPGMKTFF-CQECGKSFGHKSTLTSHQRTVHEGIKPFDCKECGNCFGQKTNLTSHQRTVHEGIKAFECQECGKCFVEKRNLTSHQRTVHEGIKPFKCQECGKSFGQKVNLTSHQGIVHEGIKPFKCQECGKSFGHKSTLTLHQRTVHEGIKPFKCQECGKCFGQKTNLTSHQRTVHQGIKAYKCHQCGKSFAKKTCLKQHQLT 1533
++F S L HQ + P + + +C K KSTL+ H +K +DC E GN F +K L+ Q+ +G K FEC ECGK F EK +LT HQR VH G K F+C +CGK+F +K NLT HQ H G KPF+C ECGK+F HKS LTLHQRT H G KP++C CGK F QK++LT HQRT H G K Y+C++CGKSF + L HQ T
Sbjct: 253 GRTFCDSSSLLFHQ--IPPSKDSHYEFSDCEKFLCVKSTLSKHDGVP---VKHYDCGESGNNFRRKLCLSQLQKG-DKGEKHFECNECGKAFWEKSHLTRHQR-VHTGEKHFQCNQCGKTFWEKSNLTKHQR-SHTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFYQKSDLTKHQRT-HTGQKPYECYECGKSFCMNSHLTVHQRT 462 HSP 7 Score: 43.5134 bits (101), Expect = 8.062e-48 Identity = 26/51 (50.98%), Postives = 30/51 (58.82%), Query Frame = 3
Query: 1551 KAFVCQECGKCFAEKRNFTSHQRTIHQG*KNF*CQECGKCFSTKTYLKRPQ 1703
K F C ECGK F +K + T HQRT H G K + C CGK F K+ L R Q
Sbjct: 467 KPFECLECGKSFCQKSHLTQHQRT-HIGDKPYECNACGKTFYHKSVLTRHQ 516 The following BLAST results are available for this feature:
BLAST of TCONS_00042952 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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