TCONS_00042890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042890
Unique NameTCONS_00042890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length354

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042890 ID=TCONS_00042890|Name=TCONS_00042890|organism=Clytia hemisphaerica|type=transcript|length=354bp
AACAAAATGCAACAAAACGTGGATCCATTTTTAATTTTGTTCTTTGCATT
TTCATTTTTTTTCAATTTAAGTAGTGAACGCCAGCCGGCCACCAAGCGCG
CTTGTCCAGCTGTAGCCGAGAAACCGGGAACTTTGAAGATATATGTTATA
AAAACCTAATACGTATTTTTTCCCAAGTAGCATTTTCATTTATTTTCATT
TCAATTAGTGAACGCCAGTCGGCCACCATGCGCGCTCCAGCCACTCCTTC
ACTTCCCAACCCGACGGACCCGTCACCTCCATCTAGTTGTGGACCGGACG
AGGATTCAAATCTTGAGCGCCAGTCGGCCACCATGCGCGCTCCAGCCACT
CCTT
Run BLAST on NCBI

transcript from alignment at sc0003755:7090..7853+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042890 ID=TCONS_00042890|Name=TCONS_00042890|organism=Clytia hemisphaerica|type=transcript|length=764bp|location=Sequence derived from alignment at sc0003755:7090..7853+ (Clytia hemisphaerica)
AACAAAATGCAACAAAACGTGGATCCATTTTTAATTTTGTTCTTTGCATT
TTCATTTTTTTTCAATTTAAGTAGTGAACGCCAGCCGGCCACCAAGCGCG
CTTGTCCAGCTGTAGCCGAGAAACCGGGAACTTTGAAGATATATGTTATA
AAAACCTAATACGTATTTTTTCCCAAGTAGCATTTTCATTTATTTTCATT
TCAATTAGTGAACGCCAGTCGGCCACCATGCGCGCTCCAGCCACTCCTTC
ACTTCCCAACCCGACGGACCCGTCACCTCCATCTAGTTGTGGACCGGACG
AGGATTCAAATCTGTAAGTCATTATATTTTCATCAAAATATGCCTTTTGC
CTTTTTAGGCCCTAAAAATTGGTTGTTTTGCTTTTTTTTGTAACCGGAAC
TAAATTTTGAAATTGTGATTTTTAAGACCCTTAGCAAGACTTACCCTGAA
AGGCGGCACGTAAACGTATTTTCCATTTGCCTAAGTACCCGCCCTCTGGG
CTTCGGCTACATTGTAACAAAATGCAACAAAACGTGGATCCATTTTTAAT
TTTGTTCTTTGCATTTTCATTTTTTTTCAATTTAAGTAGTGAACGCCAGC
CGGCCACCAAGCGCGCTTGTCCAGCTGTAGCCGAGAAACCGGGAACTTTG
AAGATATATGTTATAAAAACCTAATACGTATTTTTTCCCAAGTagcattt
tcatttattttcatttcaattagTGAGCGCCAGTCGGCCACCATGCGCGC
TCCAGCCACTCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026661XLOC_026661Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042890-exon-sc0003755-1491911889:7090..7402TCONS_00042890-exon-sc0003755-1491911889:7090..7402Clytia hemisphaericaexon
TCONS_00042890-exon-sc0003755-1510915933:7090..7402TCONS_00042890-exon-sc0003755-1510915933:7090..7402Clytia hemisphaericaexon
TCONS_00042890-exon-sc0003755-1575043694:7090..7402TCONS_00042890-exon-sc0003755-1575043694:7090..7402Clytia hemisphaericaexon
TCONS_00042890-exon-sc0003755-1491911889:7813..7853TCONS_00042890-exon-sc0003755-1491911889:7813..7853Clytia hemisphaericaexon
TCONS_00042890-exon-sc0003755-1510915933:7813..7853TCONS_00042890-exon-sc0003755-1510915933:7813..7853Clytia hemisphaericaexon
TCONS_00042890-exon-sc0003755-1575043694:7813..7853TCONS_00042890-exon-sc0003755-1575043694:7813..7853Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003755supercontigsc0003755:7090..7853 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.218664	0.213232	0	0	0	0	0.431139	0	0.330526	0	0.195184	0.655453	0	0	0	0.399743	0.290275	0	0	0.544339	2.33579	0	0	0.25505	0.310925	1.04652	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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