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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042886 ID=TCONS_00042886|Name=TCONS_00042886|organism=Clytia hemisphaerica|type=transcript|length=1240bp
GCACTTTTAAATGCGATTAATCCCAACAAACCATAAGAAAATTTATCCTT
TTAGAATGAAACCGGTAATGAAAAGATCACGCGGCTCTCAAACTGATGGA
TTTAATATGGACAAGCCAAAAAAGATGACTGTCGATACCTCAACACAGAT
TTCTTCTTCAACTGGTAGTTATAAAAGAAACAGAATTATAAATGACCTTG
ATAAAGAAGGAATGACAATAAGAAAACTTTACACCGAGGTAATATGTAAT
AAAGAGACAGCTATCCGATGGGCAATGGATAATGGCTTGATTGCTTCGTC
AATGAAATGCTCATTTTGTTCCAGTGATATGGACTTAAAAGATGCACAAA
ATTATTCATCTGATGGGTGTAGGTGGCGCTGTAGAAAAAAAGACCATAGC
AGCGAAGCTTCCATTCGAAAAGGATCgtggtttgaaaaatctaatttgAC
GTTAGAAGAAATCATTGAATTAACTTATTGGTGGTCAACTGgttGTGAAC
AAACACAAGTTTGTAAAGAGATGGGAGTCAGTAGTAAAACAGCAGTCGAC
TGGTATAGTTTCTGCAGAGAAGTGTGCGAGGTGATAATAATGGTCCATAG
CAAGCCTATTGGTGGTCCAGgTACCCGTGTTCAAATTGACGAATCTAAAT
TTGGAAAGCGGAAGTACCACCGTGGTCATAAAGTAGAAGGTCAATGGGTG
TTTGGTGGAATTGAGGAAGAAAGTAGGCAAAACTTTATGGTTGCTGTGGA
AAAAAGGGATAAGAAGACCCTCATCCCTATCATTGAACGGTATATTTTAC
CTGGAACAACAATCATATCTGATTGCTGGAAAGCTTATGACTGTCTGTCT
CAGAAGGATTACGAACATTTGAAGGTAAACCACTCTGTTGAATTCGTTAA
CAGTAACGGAGATCATACCAATAAAATTGAGGGTCACTGGCGTcaagcga
aaaaaaatttgcctccTTTTGGTGTCAAGAAATATCTCTTTTCATCTCAC
CTGGCTGAGTTCATGTGGCGGTACACCCATAAAGAGTCAGACCATTTCAT
TCAATTCATTAATGATGTCACGAAAGTTTACAGCCCTAATGTATGAACGT
AAAACAGTTTTGATTTTCTGTAAATAGTTTTAATGACTATCGTTTAATAT
AAATACTTACGTAATGTAAAACACAACTCACATTCTTTTGATTTCAAACA
AATATACCATGACAGTAAAGTAGCAAAGTAGCAAAGTAGC Run BLAST on NCBI transcript from alignment at sc0003755:2931..5021+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042886 ID=TCONS_00042886|Name=TCONS_00042886|organism=Clytia hemisphaerica|type=transcript|length=2091bp|location=Sequence derived from alignment at sc0003755:2931..5021+ (Clytia hemisphaerica)
GCACTTTTAAATGCGATTAATCCCAACAAACCATAAGAAAATTTATCCTT
TTAGAATGAAACCGGTAATGAAAAGATCACGCGGCTCTCAAACTGATGGA
TTTAATATGGACAAGCCAAAAAAGATGACTGTCGATACCTCAACACAGAT
TTCTTCTTCAACTGGTAGTTATAAAAGAAACAGAATTATAAATGACCTTG
ATAAAGAAGGAATGACAATAAGAAAACTTTACACCGAGGTAATATGTAAT
AAAGAGACAGCTATCCGATGGGCAATGGATAATGGCTTGATTGCTTCGTC
AATGAAATGCTCATTTTGTTCCAGTGATATGGACTTAAAAGATGCACAAA
ATTATTCATCTGATGGGTGTAGGTGGCGCTGTAGAAAAAAAGACCATAGC
AGCGAAGCTTCCATTCGAAAAGGATCgtggtttgaaaaatctaatttgAC
GTTAGAAGAAATCATTGAATTAACTTATTGGTGGTCAACTGGCAAGTATT
TTCgacagaaaaataatttaaacttGTTTAGGATGTTGATAGATGATTAT
ATCGTCCGTTAGAGTGATAGTAAAAACAGGGGAGTAAAGAACAAATACAT
ACAATTTgcatgaatttaaatttttttataaatctaatatctacatttat
tttttaaggttGTGAACAAACACAAGTTTGTAAAGAGATGGGAGTCAGTA
GTAAAACAGCAGTCGACTGGTATAGTTTCTGCAGAGAAGTGTGCGAGGTG
ATAATAATGGTCCATAGCAAGCCTATTGGTGGTCCAGGTTGGTAGATGAT
TTTTTACACTGGAACTAATTTGTGTTAATTACAAAGGACAGCCTTCAAAG
GAGCCAAAAGTTCATAATTTCAGACTTAGACAagctttctttttgaaatt
ctttacaAATAGAGCACAATTTGAAACGtatgatattttcaaaatttagg
ttAATGCACTAAAATTATATatggattgaaatttttttcttaggTACCCG
TGTTCAAATTGACGAATCTAAATTTGGAAAGCGGAAGTACCACCGTGGTC
ATAAAGTAGAAGGTCAATGGGTGTTTGGTGGAATTGAGGAAGAAAGTAGG
CAAAACTTTATGGTTGCTGTGGAAAAAAGGGATAAGAAGACCCTCATCCC
TATCATTGAACGGTATATTTTACCTGGAACAACAATCATATCTGATTGCT
GGAAAGCTTATGACTGTCTGTCTCAGAAGGATTACGAACATTTGAAGGTA
TTTCATCCACtgttgatttttatttattgttaTTTCGTTATATTTGATGG
CCTTTGATCATATTCAATTCGTatttaatcaatcaatcaaagcATAAACT
GCATTTTCTCATTCTCTTTTTAGGTAAACCACTCTGTTGAATTCGTTAAC
AGTAACGGAGATCATACCAATAAAATTGAGGGTCACTGGcgtcaagtgaa
aaaaaatttgcctccTTTTGGTGTCAAGAAATATCTCTTTTCATCTCACC
TGGCTGAGTTCATGTGGCGGTACACCCATAAAGAGTCANATATCTGATTG
CTGGAAAGCTTATGACTGTCTGTCTCAGAAGGATTACGAACATTTGAAGG
TATTTCATCCACtgttgatttttatttatttttattgcgtTATATTTGAT
GGCCTTTGATCATATTCAATTCGTatttaatcaatcaatcaaagcATAAA
CTGCAATTTCTCATTCTCTTTTTAGGTAAACCACTCTGTTGAATTCGTTA
ACAGTAACGGAGATCATACCAATAAAATTGAGGGTCACTGGCGTcaagcg
aaaaaaaatttgcctccTTTTGGTGTCAAGAAATATCTCTTTTCATCTCA
CCTGGCTGAGTTCATGTGGCGGTACACCCATAAAGAGTCAGACCATTTCA
TTCAATTCATTAATGATGTCACGAAAGTTTACAGCCCTAATGTATGAACG
TAAAACAGTTTTGATTTTCTGTAAATAGTTTTAATGACTATCGTTTAATA
TAAATACTTACGTAATGTAAAACACAACTCACATTCTTTTGATTTCAAAC
AAATATACCATGACAGTAAAGTAGCAAAGTAGCAAAGTAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042886-exon-sc0003755-1491911889:2931..3421 | TCONS_00042886-exon-sc0003755-1491911889:2931..3421 | Clytia hemisphaerica | exon |
| TCONS_00042886-exon-sc0003755-1510915933:2931..3421 | TCONS_00042886-exon-sc0003755-1510915933:2931..3421 | Clytia hemisphaerica | exon |
| TCONS_00042886-exon-sc0003755-1575043694:2931..3421 | TCONS_00042886-exon-sc0003755-1575043694:2931..3421 | Clytia hemisphaerica | exon |
| TCONS_00042886-exon-sc0003755-1491911889:3589..3717 | TCONS_00042886-exon-sc0003755-1491911889:3589..3717 | Clytia hemisphaerica | exon |
| TCONS_00042886-exon-sc0003755-1510915933:3589..3717 | TCONS_00042886-exon-sc0003755-1510915933:3589..3717 | Clytia hemisphaerica | exon |
| TCONS_00042886-exon-sc0003755-1575043694:3589..3717 | TCONS_00042886-exon-sc0003755-1575043694:3589..3717 | Clytia hemisphaerica | exon |
| TCONS_00042886-exon-sc0003755-1491911889:3924..4177 | TCONS_00042886-exon-sc0003755-1491911889:3924..4177 | Clytia hemisphaerica | exon |
| TCONS_00042886-exon-sc0003755-1510915933:3924..4177 | TCONS_00042886-exon-sc0003755-1510915933:3924..4177 | Clytia hemisphaerica | exon |
| TCONS_00042886-exon-sc0003755-1575043694:3924..4177 | TCONS_00042886-exon-sc0003755-1575043694:3924..4177 | Clytia hemisphaerica | exon |
| TCONS_00042886-exon-sc0003755-1491911889:4656..5021 | TCONS_00042886-exon-sc0003755-1491911889:4656..5021 | Clytia hemisphaerica | exon |
| TCONS_00042886-exon-sc0003755-1510915933:4656..5021 | TCONS_00042886-exon-sc0003755-1510915933:4656..5021 | Clytia hemisphaerica | exon |
| TCONS_00042886-exon-sc0003755-1575043694:4656..5021 | TCONS_00042886-exon-sc0003755-1575043694:4656..5021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003755 | supercontig | sc0003755:2931..5021 + |
Blast
The following BLAST results are available for this feature:
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