TCONS_00042800 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042800
Unique NameTCONS_00042800
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042800 ID=TCONS_00042800|Name=TCONS_00042800|organism=Clytia hemisphaerica|type=transcript|length=2416bp
TGGGCATAAAAAggtggctgttttagccaatctagagggtcgaaattcaa
aaattttctggcccgtcgggcccaaccatggtgggccctccttagacact
atacatagctgaatcactatatatagctgaaccTTTTTTGCAGAGTATCC
TAAAAATCCTAGATACGCCCCTGAATACCTAACTAAATATAACTCTCTAT
CTCCCTCCCCCCTGAAAGTCCAAAACAAAAAGCTATATAGGGCATGTACC
CATAAAATATACACATTAATGTCCGTCTAAAGTGATGAAGAGAACATGGT
CTCAAGTCTATATACATTTATACATGTTTGCGTAGGGTTAGGGTATCGTA
GTTCGCCCAATGAATGCCCAATATAAAGCAACATATCAACAGCTCTGAGA
AATGTCGAGCAGGGTATCTTGATAGTTCGCCCTGTGATGACATCATTATG
TGTCATAGAGTCATGAAAGTATATAACCATGACGTTTGGGGAAAGATGAA
CAGGGTATCTTAATAGTTCGCCCTGTGATTAATAATATGTAAATCGTACT
ATACAGTTCAAGTACTCATTTCAGCTCATAGTCGCTCAAGTGTCCAGGGA
CCTTTTTAATACGTTGAGATCTCCTGGGTTCTTGCGTTGAGCTTTGAGCT
TTTTGACCAGAGCGTGGAGGAGCATTGTATGTTGTAACTCCTGATGGTGA
GCCATAAGATACGGACGGTGTTGATTGAGCAGGCTTTGTTGATTGTTGGA
CGACTGGTGTAGTTGGTTGAAGATCTGACCGTTGGATACGTGGTGGTATA
ACTTCCTTCATTGGTGGTGCAGATGATGTTTGATGTTCGTCGTTCTTCAC
CGCCACAGGGGCAGCAGTTTTGTCCAGTCCCAAATGTGAGGGATGATTGA
GAGGGACTGGACGAGTTTGTGATGGAGATGGAATTATGGGATGAGTTGTG
AACGGCTGTGGTATGAGAGGTGTAAAATGAGATGGGATTTGGAGGGAAGT
GTCCTGGGGCATGACAGGGGTGAAGCGCCTCAGAAACTTCCTGTTGCGGA
GAGTGACTCTCCCTGATCCATCCACTTTGACAGCGTATTGGTCGAACTGC
CTCACTTCAATGATTGTGCCGGTCCTATCCCATTTGCGGGGGCTCTTGCC
AACTTGATTCTGGATACGCACATGATCTCCAACCTTCAGTGGTGGTAGAG
GACGGGTCCCGATGGCGAGGCGTTCAGCGATCTTGAGATGACGGTGTCGG
AGGGCTTCTTCTCGCCTTTGGAGGGAGTCTTGCCAGGTTGGATGCGGACG
ATACTTTCCAGGTAGGATAGGTACAGGCGATCGAGTAGGATGGCCAAAGA
TACATGTAGCAGGTGAGATGCGTGTGTCTGGCTGTGGTGTGTTTCTGTAG
ACGAGCATAGCTTTTTGGAAAGCGTCAGTGTCGAGGTTCCCATTGGCATC
TGTGTTGCCCACAATCATGCGCTTCACGGTCTTGACACCAATTTCAGCAC
GGCTGTTGCTGTGAGGGAAGGCTGTTGACGATATACGTTGTCTGACTCCC
CACGATTTAAGGAAGGATTCTGTAGATCTTGAGGTGAATTCCGGGCCGCC
ATCAGATGCAAGCTCCTCAGGGATACCGTAGGTAACAAACGAGCGATGTA
GGCTATCAATCAAACCGCTGCTTCCATCTCTTGCACGGTCTACGATGGGC
CAGTTTGAGTAGCGATCAACGGATACAAGATAGTATTTNCTTCGCTTGTG
CCGGCTGATGAGATTGTTGGCCTCTTGACTCTCTCCACTTTAGCAGCACT
CTGTTGATTGGGTGAGCCGGTGTGGGTAGCCGTGATGAGGGTTGCAACAA
TCGTGGCATCTAGGTCAGGGGTGACGTAATCACAAGATTCGATTGGGCAT
ACAGCAGGCATCTTTGTTGAGCAACCAAATGATATCAATTCAAAAGATCA
AACATAGATAGGCACTAGCCGGTGAAGTTGGTATggacaatgggcttttc
cagaaaaaaaccgtataccccctgttgaggaggtccatttccgttccaag
ggggtaaggtttgatatgtgccGGAATTCCATAGAGATacaaaaaactgt
caaaaattactggaattccatgggggtagccttttaaatcctactaaaat
tcagaattccagagggagggtaaacctgaaattgcctggaattccagagg
gttacagcatttccagccacaaaatgatggacctcctcaacaggggtata
cggtttttttctggaaaagcccaatgagcTAGACGATGTCGCTCGTGCTC
TTTTCAACGGACAAATTCCACCGAGTTGGCGAAAACTTGCTCCTGCGACG
CTCAAAAATTTGGGTGGTTGGATGGAACATTTTATGCGAAGAAATGAACA
ATATACTTCATGGGNN
Run BLAST on NCBI

transcript from alignment at sc0003684:14565..17284+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042800 ID=TCONS_00042800|Name=TCONS_00042800|organism=Clytia hemisphaerica|type=transcript|length=2720bp|location=Sequence derived from alignment at sc0003684:14565..17284+ (Clytia hemisphaerica)
TGGGCATAAAAAggtggctgttttagccaatctagagggtcgaaattcaa
aaattttctggcccgtcgggcccaaccatggtgggccctccttagacact
atacatagctgaatcactatatatagctgaaccTTTTTTGCAGAGTATCC
TAAAAATCCTAGATACGCCCCTGAATACCTAACTAAATATAACTCTCTAT
CTCCCTCCCCCCTGAAAGTCCAAAACAAAAAGCTATATAGGGCATGTACC
CATAAAATATACACATTAATGTCCGTCTAAAGTGATGAAGAGAACATGGT
CTCAAGTCTATATACATTTATACATGTTTGCGTAGGGTTAGGGTATCGTA
GTTCGCCCAATGAATGCCCAATATAAAGCAACATATCAACAGCTCTGAGA
AATGTCGAGCAGGGTATCTTGATAGTTCGCCCTGTGATGACATCATTATG
TGTCATAGAGTCATGAAAGTATATAACCATGACGTTTGGGGAAAGATGAA
CAGGGTATCTTAATAGTTCGCCCTGTGATTAATAATATGTAAATCGTACT
ATACAGTTCAAGTACTCATTTCAGCTCATAGTCGCTCAAGTGTCCAGGGA
CCTTTTTAATACGTTGAGATCTCCTGGGTTCTTGCGTTGAGCTTTGAGCT
TTTTGACCAGAGCGTGGAGGAGCATTGTATGTTGTAACTCCTGATGGTGA
GCCATAAGATACGGACGGTGTTGATTGAGCAGGCTTTGTTGATTGTTGGA
CGACTGGTGTAGTTGGTTGAAGATCTGACCGTTGGATACGTGGTGGTATA
ACTTCCTTCATTGGTGGTGCAGATGATGTTTGATGTTCGTCGTTCTTCAC
CGCCACAGGGGCAGCAGTTTTGTCCAGTCCCAAATGTGAGGGATGATTGA
GAGGGACTGGACGAGTTTGTGATGGAGATGGAATTATGGGATGAGTTGTG
AACGGCTGTGGTATGAGAGGTGTAAAATGAGATGGGATTTGGAGGGAAGT
GTCCTGGGGCATGACAGGGGTGAAGCGCCTCAGAAACTTCCTGTTGCGGA
GAGTGACTCTCCCTGATCCATCCACTTTGACAGCGTATTGGTCGAACTGC
CTCACTTCAATGATTGTGCCGGTCCTATCCCATTTGCGGGGGCTCTTGCC
AACTTGATTCTGGATACGCACATGATCTCCAACCTTCAGTGGTGGTAGAG
GACGGGTCCCGATGGCGAGGCGTTCAGCGATCTTGAGATGACGGTGTCGG
AGGGCTTCTTCTCGCCTTTGGAGGGAGTCTTGCCAGGTTGGATGCGGACG
ATACTTTCCAGGTAGGATAGGTACAGGCGATCGAGTAGGATGGCCAAAGA
TACATGTAGCAGGTGAGATGCGTGTGTCTGGCTGTGGTGTGTTTCTGTAG
ACGAGCATAGCTTTTTGGAAAGCGTCAGTGTCGAGGTTCCCATTGGCATC
TGTGTTGCCCACAATCATGCGCTTCACGGTCTTGACACCAATTTCAGCAC
GGCTGTTGCTGTGAGGGAAGGCTGTTGACGATATACGTTGTCTGACTCCC
CACGATTTAAGGAAGGATTCTGTAGATCTTGAGGTGAATTCCGGGCCGCC
ATCAGATGCAAGCTCCTCAGGGATACCGTAGGTAACAAACGAGCGATGTA
GGCTATCAATCAAACCGCTGCTTCCATCTCTTGCACGGTCTACGATGGGC
CAGTTTGAGTAGCGATCAACGGATACAAGATAGTATTTNCTTCGCTTGTG
CCGGCTGATGAGATTGTTGGCCTCTTGACTCTCTCCACTTTAGCAGCACT
CTGTTGATTGGGTGAGCCGGTGTGGGTAGCCGTGATGAGGGTTGCAACAA
TCGTGGCATCTAGGTCAGGGGTGACGTAATCACAAGATTCGATTGGGCAT
ACAGCAGGCATCTTTGTTGAGCAACCAAATGATATCAATTCAAAAGATCA
AACATAGATAGGCATGAATACCATTTACTTTATTATCTTTATAATTGTAA
TGTTTGATCTAAAATATAAGAAGCAAANCATTTACTTTATTATCTTTATA
ATTGTAATGTTTGATCTAAAATATAAGAAGCAAAATCTTACATCCAATAC
CTAACTAAATATAACTCTCTAGACTAGACGCCTTAAATTACTTGGCCATT
GCTTACGGGCTTAAAGATATCTTTGTTTTAATGACTGTATTTTCGTTATA
GTAGATTGCCCGAAATATCAAAGATTATATAACTATAAAGTTTTATCAAT
CTCATAATATTTTAGGCACTAGCCGGTGAAGTTGGTATggacaatgggct
tttccagaaaaaaaccgtataccccctgttgaggaggtccatttccgttc
caagggggtaaggtttgatatgtgccGGAATTCCATAGAGATacaaaaaa
ctgtcaaaaattactggaattccatgggggtagccttttaaatcctacta
aaattcagaattccagagggagggtaaacctgaaattgcctggaattcca
gagggttacagcatttccagccacaaaatgatggacctcctcaacagggg
tatacggtttttttctggaaaagcccaatgagcTAGACGATGTCGCTCGT
GCTCTTTTCAACGGACAAATTCCACCGAGTTGGCGAAAACTTGCTCCTGC
GACGCTCAAAAATTTGGGTGGTTGGATGGAACATTTTATGCGAAGAAATG
AACAATATACTTCATGGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026595XLOC_026595Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042800-exon-sc0003684-1491911889:14565..16525TCONS_00042800-exon-sc0003684-1491911889:14565..16525Clytia hemisphaericaexon
TCONS_00042800-exon-sc0003684-1510915933:14565..16525TCONS_00042800-exon-sc0003684-1510915933:14565..16525Clytia hemisphaericaexon
TCONS_00042800-exon-sc0003684-1575043694:14565..16525TCONS_00042800-exon-sc0003684-1575043694:14565..16525Clytia hemisphaericaexon
TCONS_00042800-exon-sc0003684-1491911889:16830..17284TCONS_00042800-exon-sc0003684-1491911889:16830..17284Clytia hemisphaericaexon
TCONS_00042800-exon-sc0003684-1510915933:16830..17284TCONS_00042800-exon-sc0003684-1510915933:16830..17284Clytia hemisphaericaexon
TCONS_00042800-exon-sc0003684-1575043694:16830..17284TCONS_00042800-exon-sc0003684-1575043694:16830..17284Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003684supercontigsc0003684:14565..17284 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.263398	0.138307	0.367056	0.251577	1.48793	1.72288	2.68361	4.45221	1.75814	1.45501	1.84082	2.4418	2.13367	2.49955	0.145729	0.152387	0.197732	0.176492	0.12923	0.157768	0.0979494	0.280105	0.0929254	0.105603	2.1001	5.22189	0.0833473	0.0889505	0.0965915	0.0458246
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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