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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042755 ID=TCONS_00042755|Name=TCONS_00042755|organism=Clytia hemisphaerica|type=transcript|length=1140bp
NGTACACTGATGAGACTCGTAAAAATGGGACATGGGTTTCCTGTTGTTAC
ATAATAGCTCACGTAACCAAAGTCGTTAACATTTCACAACCTGAGAAGGG
GGGGGTTCTGGCTTCGCTCGTGATTCAACATCACGGGGGCACGAAAGAGT
GTTGCCCTCAACACACAAATCCAAGTGTCTTGATCACATATCTTCTTCTG
CTGCCACCCGTCTTTTTCTGGGAGATTGTTGATTTTGATAGTTGTTTCTA
GCATTGTAACTGTTGTGACGGGCATTATGATATGACTGGCGAGGTTGCCT
TTGCTGTTTTGAATAACAGACCCTGGCTATATGACCTGGCTTCCCGTAGC
GAAAGCAGGTGAGTGGCTTCCTAATTTTGTTTTCATCATTTTTGGGCCCC
ATGGCTTCCACAGCGGCGAGGATGCTCTGCATGGTGGCTGCGTCATCCCT
TGGGGGACTAATTGATTCCTTTAACAAAAGGGCATGGGTTGCATCGCTGT
AGGACTTGGGTTGTTTCATCTGTATATAATTCCTATAGGGTAAGTCTAAG
CCAGCAATCATAATATCTAGTTTGGTTTGGTCCGCCACTTCCAGATTGTG
TGAGAGCTTTTCCACTTTTTCTAAGTATTTTGTAATGCTTTCGCCTTTTT
GTTGAATGCCGTGTAGCTCTTGGCGTTTCCGATATTTCAATTCTGGAGCG
TCAAATTCTTTTCGAAGACAATCAGATAACTTCTTATAGTCTTCTTTCGA
GTTATTAGTTAGGGTCAAAAAGAACGTGTACGCTCTATTCTTTAATAATA
GAGGTATTACTCTTGCTTTCTGCTGATCGTTTAATTGGTAAAATGACAAT
GACAAATCAAGTTTGGTCAAAAACTCAACTATGTCTTCATCTGATTGGGC
ACCAAATTTTGGGAGGGAAGCAATGTGCACTCTATTGGCAAGTAGGGAGG
TAAGTAAAACTGTGTCTGACATTGGATTCGACTCTTTCACAATTTTCATT
GTGTTATTAGGGTTGGGTTTTTGACTGTCACTTCTAAGCCCGCGAATAGC
AGGAGTAGAAATGTCAATAGGGAATGGGGTTTTGGACGAGAAGGGTTCTC
CACGATTGACTGGGTCATTTGTTTCTAGTCGTAATCTTTC Run BLAST on NCBI protein sequence of TCONS_00042755-protein >TCONS_00042755-protein ID=TCONS_00042755-protein|Name=TCONS_00042755-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
ERLRLETNDPVNRGEPFSSKTPFPIDISTPAIRGLRSDSQKPNPNNTMKI
VKESNPMSDTVLLTSLLANRVHIASLPKFGAQSDEDIVEFLTKLDLSLSF
YQLNDQQKARVIPLLLKNRAYTFFLTLTNNSKEDYKKLSDCLRKEFDAPE
LKYRKRQELHGIQQKGESITKYLEKVEKLSHNLEVADQTKLDIMIAGLDL
PYRNYIQMKQPKSYSDATHALLLKESISPPRDDAATMQSILAAVEAMGPK
NDENKIRKPLTCFRYGKPGHIARVCYSKQQRQPRQSYHNARHNSYNARNN
YQNQQSPRKRRVAAEEDM Run BLAST on NCBI transcript from alignment at sc0003652:4412..5551 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042755 ID=TCONS_00042755|Name=TCONS_00042755|organism=Clytia hemisphaerica|type=transcript|length=1140bp|location=Sequence derived from alignment at sc0003652:4412..5551 (Clytia hemisphaerica)
GAAAGATTACGACTAGAAACAAATGACCCAGTCAATCGTGGAGAACCCTT
CTCGTCCAAAACCCCATTCCCTATTGACATTTCTACTCCTGCTATTCGCG
GGCTTAGAAGTGACAGTCAAAAACCCAACCCTAATAACACAATGAAAATT
GTGAAAGAGTCGAATCCAATGTCAGACACAGTTTTACTTACCTCCCTACT
TGCCAATAGAGTGCACATTGCTTCCCTCCCAAAATTTGGTGCCCAATCAG
ATGAAGACATAGTTGAGTTTTTGACCAAACTTGATTTGTCATTGTCATTT
TACCAATTAAACGATCAGCAGAAAGCAAGAGTAATACCTCTATTATTAAA
GAATAGAGCGTACACGTTCTTTTTGACCCTAACTAATAACTCGAAAGAAG
ACTATAAGAAGTTATCTGATTGTCTTCGAAAAGAATTTGACGCTCCAGAA
TTGAAATATCGGAAACGCCAAGAGCTACACGGCATTCAACAAAAAGGCGA
AAGCATTACAAAATACTTAGAAAAAGTGGAAAAGCTCTCACACAATCTGG
AAGTGGCGGACCAAACCAAACTAGATATTATGATTGCTGGCTTAGACTTA
CCCTATAGGAATTATATACAGATGAAACAACCCAAGTCCTACAGCGATGC
AACCCATGCCCTTTTGTTAAAGGAATCAATTAGTCCCCCAAGGGATGACG
CAGCCACCATGCAGAGCATCCTCGCCGCTGTGGAAGCCATGGGGCCCAAA
AATGATGAAAACAAAATTAGGAAGCCACTCACCTGCTTTCGCTACGGGAA
GCCAGGTCATATAGCCAGGGTCTGTTATTCAAAACAGCAAAGGCAACCTC
GCCAGTCATATCATAATGCCCGTCACAACAGTTACAATGCTAGAAACAAC
TATCAAAATCAACAATCTCCCAGAAAAAGACGGGTGGCAGCAGAAGAAGA
TATGTGATCAAGACACTTGGATTTGTGTGTTGAGGGCAACACTCTTTCGT
GCCCCCGTGATGTTGAATCACGAGCGAAGCCAGAACCCCCCCCTTCTCAG
GTTGTGAAATGTTAACGACTTTGGTTACGTGAGCTATTATGTAACAACAG
GAAACCCATGTCCCATTTTTACGAGTCTCATCAGTGTACN Coding sequence (CDS) from alignment at sc0003652:4412..5551 >TCONS_00042755 ID=TCONS_00042755|Name=TCONS_00042755|organism=Clytia hemisphaerica|type=CDS|length=957bp|location=Sequence derived from alignment at sc0003652:4412..5551 (Clytia hemisphaerica)
GAAAGATTACGACTAGAAACAAATGACCCAGTCAATCGTGGAGAACCCTT
CTCGTCCAAAACCCCATTCCCTATTGACATTTCTACTCCTGCTATTCGCG
GGCTTAGAAGTGACAGTCAAAAACCCAACCCTAATAACACAATGAAAATT
GTGAAAGAGTCGAATCCAATGTCAGACACAGTTTTACTTACCTCCCTACT
TGCCAATAGAGTGCACATTGCTTCCCTCCCAAAATTTGGTGCCCAATCAG
ATGAAGACATAGTTGAGTTTTTGACCAAACTTGATTTGTCATTGTCATTT
TACCAATTAAACGATCAGCAGAAAGCAAGAGTAATACCTCTATTATTAAA
GAATAGAGCGTACACGTTCTTTTTGACCCTAACTAATAACTCGAAAGAAG
ACTATAAGAAGTTATCTGATTGTCTTCGAAAAGAATTTGACGCTCCAGAA
TTGAAATATCGGAAACGCCAAGAGCTACACGGCATTCAACAAAAAGGCGA
AAGCATTACAAAATACTTAGAAAAAGTGGAAAAGCTCTCACACAATCTGG
AAGTGGCGGACCAAACCAAACTAGATATTATGATTGCTGGCTTAGACTTA
CCCTATAGGAATTATATACAGATGAAACAACCCAAGTCCTACAGCGATGC
AACCCATGCCCTTTTGTTAAAGGAATCAATTAGTCCCCCAAGGGATGACG
CAGCCACCATGCAGAGCATCCTCGCCGCTGTGGAAGCCATGGGGCCCAAA
AATGATGAAAACAAAATTAGGAAGCCACTCACCTGCTTTCGCTACGGGAA
GCCAGGTCATATAGCCAGGGTCTGTTATTCAAAACAGCAAAGGCAACCTC
GCCAGTCATATCATAATGCCCGTCACAACAGTTACAATGCTAGAAACAAC
TATCAAAATCAACAATCTCCCAGAAAAAGACGGGTGGCAGCAGAAGAAGA
TATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042755-exon-sc0003652-1491911889:4412..5551 | TCONS_00042755-exon-sc0003652-1491911889:4412..5551 | Clytia hemisphaerica | exon |
| TCONS_00042755-exon-sc0003652-1510915933:4412..5551 | TCONS_00042755-exon-sc0003652-1510915933:4412..5551 | Clytia hemisphaerica | exon |
| TCONS_00042755-exon-sc0003652-1575043694:4412..5551 | TCONS_00042755-exon-sc0003652-1575043694:4412..5551 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003652 | supercontig | sc0003652:4412..5551 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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