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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042753 ID=TCONS_00042753|Name=TCONS_00042753|organism=Clytia hemisphaerica|type=transcript|length=3990bp
NAACTGATTAAAATGCTACTTTAAAACACCAAGCGAAGCAAAACTTTTAg
gtttcttttgataatttgaCAGAAGGTCTccggttaaaaacttttttaca
aaaaacataaattttgatgtaatttttctgcttttttctgCAAACACGCA
AAAATacacctacattttggggtgcagtAGAAAAGCAATCtagatttttg
acaattttttggatcaattcccttatttttaaaatttatctcgATTCTGT
ATTGTATTAGGTCTcaccatacaaaaaatcaacaaGATTTATTGATTTCA
CTAGAAGTTATACGGAAAAAGGCTAGcctacattttggggtgcagtaact
ttaaaaaatgaaagttcgGGCGTGAATAATTTTAACAACAATGGTTTAAA
ATGGAATTATGCATTGGGAAAGAATCTTTAGGTGACAAATAAGTGTTATT
AGGCTCATTTTTGTATTTCCAATGTTTATTTGAGGCgtcagaaagaaaac
aaaattcatcgacattttggggtgcagacAGTGTACATGGCTTGGGTTTA
TTATCAGTTctgaaactttcaaattttttgtaccTGAGAAGAAAATATCT
GCTCTGAAAAAACTGCTATCCAGTCTTATCTTACGTCAAAGAGGCTCTGC
TAGGGAAATATCAAGAGTTGCAGGCATGATTATTAGCATGAAACCCGCCA
TTGGTTCGATATCCCAGATTTTGACGAGGCACTTGTTCTTTTTCATAAAC
GAAAAACCAACTTGGGATCGCCAGCATGACTTGAATAATGAAGTATGCGA
AGAGCTTTTATTTTGGTTCAATAACCTTGATTTTTACAATGGGCACAAAA
TCAGAACAAACAATAGTATTACTAAGGTAGTTTTTTCAGATGCCAGCGAA
AAGGGTTATGGCAGTTTCATTATCGAAAAACTCGGCAATATCGTGGCAAG
GGACAATTTCAATTATTCTGAAAAAGGAACAAGTTCAACTTACAGAGAGC
TGTTGGCAGTCAAATACTCATTAGAAAGCTTTTACTCACTTTTAACCAAC
CAAAAAATCCTGTGGCATTCAGACAATACAAACGTAGCAAGAATAATTCA
AATAGGCAGCAGAAAGCCTCATCTTCAAAACATTGCTTTagacattttta
aactttgctTAATATTTGACATAGAAATTACAACACAGTGGATACTTAGG
GAGTACAATCAAATTGCAGACCAAATTTCCAAATACATAGACTATGATGA
TTGGAGCATCGATTATGAATCATTTAGNTATCTTTCCCTGTACCAGCAGT
GGCTGGGTAGTACAGAATGGATTTGGATTTTATCTGTACCAGTAGTGGCT
GGGTAGTACAGATGGTAGTATTTTAGTAACTGTTTTCTCATGTACCAGGA
GTGGCTGGGTAGTACAGggctaaattttgtttttcctgtACCAGTAGTGG
CTGGGTAGTACAGGTGCATTGATTAGTATGCTAGAGAAAAGTCAAGtgag
attttattttgattgctTGTAGGCACAGAAGAACAAAGTCTGGAGGAGAG
ATTGGAAACTATCCAAAATAAAGAGCTCCGTGAGAAAGGAAATAACTTGT
ATGAATTAATCGATGCCAACTGGGCAAGGAGCACAGCTAGAAAGTATTCT
TATGGATGGAACGCGTGGGTAAAATGGAGTGACCAATATGATGAAGTTTT
AGCCATACCTGCAGATCCTTTTCACATTTGTTTGTATTTGAACGATCTat
caaaagagaaaaaacagCCAGGCACAATAACTAACGCCTTAACAGGAATA
CGGTGGGGTCACTTGAGAAAAGGGTACCAGTCTCCTACAGATGATTGTCT
TGTACAGTTAACTTTTAAAGGTGCATTACGTATAGCTTCAGAGCATAAAG
TGTCAAATCAAAAAGAGCCATTACCACCTGAATTAGTAAAAAAGGTCTGT
GAAGAGTATGGGCACAGTGACAACCTTATGCAtaaacgttttttgttttt
tgtttttgtttttttagaaatttatctACCACTGCTACAAACACTTCCTC
CTGGCGGTCAGTGTTCActtctttgttttcaagtttCTCCTGTCTTGACT
GCTGTAAAaaatttttaagtgtttttcTGTGGTCTGAGTTTGTATCACGT
GCAGCGCTCATGTTGCGATAAACTTAACTGAGTGAAGTTtttgtgttaaa
ctttttttgttcTGCCTTAAATAGTAGATAAAATAAGGTGCAATCTTACA
GAAGTGTCCTGCAGAGCTTACAGATGCAGAAGTCgacaatcaaaaatcaa
aaaaaggttttgaagaAGATGATGCGTAAAATGGATCAACAAGGTGATGC
CTATTTGAAAAGCAACGTACGAGCCTTAGTTCAAAAGTTGCAAAAGGATG
GGACGCTCGGAGAACAAGCTAGTAACCATTTCGCTGcccaaaagaaaatt
aattcacaagtttaaaaatttttctaaaaagggcaaaaaaccTTACGGTA
AACCCGCTACTAAAGCAGCTAGTCAAGCGgaataattttgtaatttttac
ttTTGTCAATTGATTTTTTAGAAAGATAAAAGAAGGTTTATAAAACAATA
AACAAAGCTTTATTTCTGAATTAcaattattttatttcttttaattaatt
ttacggtctgtttatttttttaggggaaaaaatgaaattaaaatggaGAT
AAAATGCCACTACTGTGAAGAAGTATTGGAGCATAACGTTGTTGCTTTAA
TTAAACATTACAAGAAGCATGATATAACCACTGataattctctttttaaa
acgtttttgttAACTGCTACTAGACCGCTGACGGTTTTAGACAAGCCTAA
TTTATGTTTTGTTTGCGGAAAAGAATTTACCGTAGAGTTTTTGTTAAGAA
AACATCAACTCGAGTCTCACCCTTATCTAGGATATTCTAAGGAAATTTTC
GATCGAGAGGTGGTTAAGAACCTTGTTAAATATGAATATTCTATGCTGGA
TGCCACTAACAACAGAGGAACCGCTACGTCTTTTAAAGTATCAGCAAGCA
GAACTTCTTATAGGGCGAATCGTGAACAGGGTATTTATTGGTACAATTCA
GACGCGGGAGAACTATTTTTGTCTGCTGCCAAGAAATGCATAGATTGgAT
GCGCTTTCAAACTGGAACAGAAGAACTGAAAATATTTACGAATTTGATGT
TTGgttggcaaaatttttttaagaacgaCGGTAGTATATTGGGTGGAGGC
GAAGAGGCCTTTGACGTTGTAAGAGATGGAGGGGGTACTAATTCTAACGT
GAGCACATCTGTAAAGCGAAATTACGGATTGTATGGGGCGGGATATCAAA
AGTTAAAATCTGCTATAGAAAGCAAAATACTTGCCCCCAGCGGTAATATG
AGAGGCTCTCAATGGGGTTTTCattcttttaaatattttaacttGGTTTC
TTCATTGAGCGGTTCTGGGGACGAAGCCTTAACAAAAATAGTCTCTGGTC
CCGAAGAAGAAGATGAGGAAGAAAAAGCGTTCGAGTTTCGAAAAAGAGCC
GAAAGACCCAAACCAAATTTGTGGTCGATTGATACCATATTGCAAGGTAA
AAGAAAATCAGAAGAACCACCATCAGTAAAAGAAGAGCACAGACAAGCTA
AAGTTCGCTTAATGACGTCTCAACACGCCTCCACCAGCAAAGGCAAACAT
CGTGCGGCTAAAAATTTGaattCATTTTTCGATAAGTGTACAGTGGACAG
AAGATCAGAAACACAAATCGAAAGAAACAAGAGTGCAGTTGAAGTTTGAA
GTTACTATGGTTTAGAGTTAGAGGAGAAGCGTATTTTCGCGCAGTCGAAG
ATagagcgaaaattagtttctccGCGATCTCACACTCAAATAGTAGGGCG
TCAGGGCGTGATCGTGAATGGGCGGACGGGCGTCCGAGAGACATGGGTTC
GAGTACGCATGCTCAGATGAGACATGTATGGGTTTAAANN Run BLAST on NCBI transcript from alignment at sc0003649:946..6327- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042753 ID=TCONS_00042753|Name=TCONS_00042753|organism=Clytia hemisphaerica|type=transcript|length=5382bp|location=Sequence derived from alignment at sc0003649:946..6327- (Clytia hemisphaerica)
NAACTGATTAAAATGCTACTTTAAAACACCAAGCGAAGCAAAACTTTTAG
GTTTCTTTTGATAATTTGACAGAAGGTCTCCGGTTAAAAACTTTTTTACA
AAAAACATAAATTTTGATGTAATTTTTCTGCTTTTTTCTGCAAACACGCA
AAAATACACCTACATTTTGGGGTGCAGTAGAAAAGCAATCTAGATTTTTG
ACAATTTTTTGGATCAATTCCCTTATTTTTAAAATTTATCTCGATTCTGT
ATTGTATTAGGTCTCACCATACAAAAAATCAACAAGATTTATTGATTTCA
CTAGAAGTTATACGGAAAAAGGCTAGCCTACATTTTGGGGTGCAGTAACT
TTAAAAAATGAAAGTTCGGGCGTGAATAATTTTAACAACAATGGTTTAAA
ATGGAATTATGCATTGGGAAAGAATCTTTAGGTGACAAATAAGTGTTATT
AGGCTCATTTTTGTATTTCCAATGTTTATTTGAGGCGTCAGAAAGAAAAC
AAAATTCATCGACATTTTGGGGTGCAGACAGTGTACATGGCTTGGGTTTA
TTATCAGTTCTGAAACTTTCAAATTTTTTGTACCTGAGAAGAAAATATCT
GCTCTGAAAAAACTGCTATCCAGTCTTATCTTACGTCAAAGAGGCTCTGC
TAGGGAAATATCAAGAGTTGCAGGCATGATTATTAGCATGAAACCCGCCA
TTGGTTCGATATCCCAGATTTTGACGAGGCACTTGTTCTTTTTCATAAAC
GAAAAACCAACTTGGGATCGCCAGCATGACTTGAATAATGAAGTATGCGA
AGAGCTTTTATTTTGGTTCAATAACCTTGATTTTTACAATGGGCACAAAA
TCAGAACAAACAATAGTATTACTAAGGTAGTTTTTTCAGATGCCAGCGAA
AAGGGTTATGGCAGTTTCATTATCGAAAAACTCGGCAATATCGTGGCAAG
GGACAATTTCAATTATTCTGAAAAAGGAACAAGTTCAACTTACAGAGAGC
TGTTGGCAGTCAAATACTCATTAGAAAGCTTTTACTCACTTTTAACCAAC
CAAAAAATCCTGTGGCATTCAGACAATACAAACGTAGCAAGAATAATTCA
AATAGGCAGCAGAAAGCCTCATCTTCAAAACATTGCTTTAGACATTTTTA
AACTTTGCTTAAAATTTGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACACTTAAACCCCTCAA
AATCTTGTGCATGGCTTGGGTTTATTATCAGTTCTGAAACTTTCAAATTT
TTTGTACCTGAGAAGAAAATATCTGCTCTGAAAAAACTGCTATCCAGTTT
TATCTTACGTCAAAGAGGCTCTGCTAGGGAAATATCAAGAGTTGCAGGCA
TGATTATTAGCATGAAACCCGCCATTGGTTCGATATCCCAGATTTTGACG
AGGCACTTGTTCTTTTTCATAAACGAAAAACCAACTTGGGATCGCCAGCA
TGACTTGAATAATGAAGTATGCGAAGAGCTTTTATTTTGGTTCAATAACC
TTGATTTTTACAATGGGCACAAAATCAGAACAAACAATAGTATTACTAAG
GTAGTTTTTTCAGATGCCAGCGAAAAGGGTTATGGCAGTTTCATTATCGA
AAAACTCGGCAATATCGTGGCAAGGGACAATTTCAATTATTCTGAAAAAG
GAACAAGTTCAACTTACAGAGAGCTGTTGGCAGTCAAATACTCATTAGAA
AGCTTTTACTCACTTTTAACCAACCAAAAAATCCTGTGGCATTCAGACAA
TACAAACGTAGCAAGAATAATTCAAATAGGCAGCAGAAAGCATCATCTTC
AAAACATTGCTTTAGACATTTTTAAACTTTGCTTAATATTTGACATAGAA
ATTACAACACAGTGGATACTTAGGGAGTACAATCAAATTGCAGACCAAAT
TTCCAAATACATAGACTATGATGATTGGAGCATCGATTATGAATCATTTA
GNTATCTTTCCCTGTACCAGCAGTGGCTGGGTAGTACAGAATGGATTTGG
ATTTTATCTGTACCAGTAGTGGCTGGGTAGTACAGATGGTAGTATTTTAG
TAACTGTTTTCTCATGTACCAGGAGTGGCTGGGTAGTACAGGGCTAAATT
TTGTTTTTCCTGTACCAGTAGTGGCTGGGTAGTACAGGTGCATTGATTAG
TATGCTAGAGAAAAGTCAAGTGAGATTTTATTTTGATTGCTTGTAGGCAC
AGAAGAACAAAGTCTGGAGGAGAGATTGGAAACTATCCAAAATAAAGAGC
TCCGTGAGAAAGGAAATAACTTGTATGAATTAATCGATGCCAACTGGGCA
AGGAGCACAGCTAGAAAGTATTCTTATGGATGGAACGCGTGGGTAAAATG
GAGTGACCAATATGATGAAGTTTTAGCCATACCTGCAGATCCTTTTCACA
TTTGTTTGTATTTGAACGATCTATCAAAAGAGAAAAAACAGCCAGGCACA
ATAACTAACGCCTTAACAGGAATACGGTGGGGTCACTTGAGAAAAGGGTA
CCAGTCTCCTACAGATGATTGTCTTGTACAGTTAACTTTTAAAGGTGCAT
TACGTATAGCTTCAGAGCATAAAGTGTCAAATCAAAAAGAGCCATTACCA
CCTGAATTAGTAAAAAAGGTCTGTGAAGAGTATGGGCACAGTGACAACCT
TATGCATAAACGTTTTTTGTTTTTTGTTTTTGTTTTTTTAGAAATTTATC
TACCACTGCTACAAACACTTCCTCCTGGCGGTCAGTGTTCACTTCTTTGT
TTTCAAGTTTCTCCTGTCTTGACTGCTGTAAAAAATTTTTAAGTGTTTTT
CTGTGGTCTGAGTTTGTATCACGTGCAGCGCTCATGTTGCGATAAACTTA
ACTGAGTGAAGTTTTTGTGTTAAACTTTTTTTGTTCTGCCTTAAATAGTA
GATAAAATAAGGTGCAATCTTACAGAAGTGTCCTGCAGAGCTTACAGATG
CAGAAGTCGACAATCAAAAATCAAAAAAAGGTTTTGAAGAAGATGATGCG
TAAAATGGATCAACAAGGTGATGCCTATTTGAAAAGCAACGTACGAGCCT
TAGTTCAAAAGTTGCAAAAGGATGGGACGCTCGGAGAACAAGCTAGTAAC
CATTTCGCTGCCCAAAAGAAAATTAATTCACAAGTTTAAAAATTTTTCTA
AAAAGGGCAAAAAACCTTACGGTAAACCCGCTACTAAAGCAGCTAGTCAA
GCGGAATAATTTTGTAATTTTTACTTTTGTCAATTGATTTTTTAGAAAGA
TAAAAGAAGGTTTATAAAACAATAAACAAAGCTTTATTTCTGAATTACAA
TTATTTTATTTCTTTTAATTAATTTTACGGTCTGTTTATTTTTTTAGGGG
AAAAAATGAAATTAAAATGGAGATAAAATGCCACTACTGTGAAGAAGTAT
TGGAGCATAACGTTGTTGCTTTAATTAAACATTACAAGAAGCATGATATA
ACCACTGATAATTCTCTTTTTAAAACGTTTTTGTTAACTGCTACTAGACC
GCTGACGGTTTTAGACAAGCCTAATTTATGTTTTGTTTGCGGAAAAGAAT
TTACCGTAGAGTTTTTGTTAAGAAAACATCAACTCGAGTCTCACCCTTAT
CTAGGATATTCTAAGGAAATTTTCGATCGAGAGGTGGTTAAGAACCTTGT
TAAATATGAATATTCTATGCTGGATGCCACTAACAACAGAGGAACCGCTA
CGTCTTTTAAAGTATCAGCAAGCAGAACTTCTTATAGGGCGAATCGTGAA
CAGGGTATTTATTGGTACAATTCAGACGCGGGAGAACTATTTTTGTCTGC
TGCCAAGAAATGCATAGATTGGTGAGTAATATTTTTCCTAAAGGTTTTTT
AAAAAAAGTTTTATGGATTTCGTTATTGTTATTGTTATTGTTTTTATTTT
TATTAGGATGCGCTTTCAAACTGGAACAGAAGAACTGAAAATATTTACGA
ATTTGATGTTTGGTTGGCAAAATTTTTTTAAGAACGACGGTAGTATATTG
GGTGGAGGCGAAGAGGCCTTTGACGTTGTAAGAGATGGAGGGGGTACTAA
TTCTAACGTGAGCACATCTGTAAAGCGAAATTACGGATTGTATGGGGCGG
GATATCAAAAGTTAAAATCTGCTATAGAAAGCAAAATACTTGCCCCCAGC
GGTAATATGAGAGGCTCTCAATGGGGTTTTCATTCTTTTAAATATTTTAA
CTTGGTTTCTTCATTGAGCGGTTCTGGGGACGAAGCCTTAACAAAAATAG
TCTCTGGTCCCGAAGAAGAAGATGAGGAAGAAAAAGCGTTCGAGTTTCGA
AAAAGAGCCGAAAGACCCAAACCAAATTTGTGGTCGATTGATACCATATT
GCAAGGTAAAAGAAAATCAGAAGAACCACCATCAGTAAAAGAAGAGCACA
GACAAGCTAAAGTTCGCTTAATGACGTCTCAACACGCCTCCACCAGCAAA
GGCAAACATCGTGCGGCTAAAAATTTGGTAAGCTATACTCTTCTTAATTT
AACCGGCGACTAAGTAAATTGTGATGTTTTAACTTGATGCGTTTTTTATT
TTATTTTCAGAATTCATTTTTCGATAAGTGTACAGTGGACAGAAGATCAG
AAACACAAATCGAAAGAAACAAGAGTGCAGTTGAAGTTTGAAGTTACTAT
GGTTTAGAGTTAGAGGAGAAGCGTATTTTCGCGCAGTCGAAGATAGAGCG
AAAATTAGTTTCTCCGCGATCTCACACTCAAATAGTAGGGCGTCAGGGCG
TGATCGTGAATGGGCGGACGGGCGTCCGAGAGACATGGGTTCGAGTACGC
ATGCTCAGATGAGACATGTATGGGTTTAAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042753-exon-sc0003649-1575043694:5185..6327 | TCONS_00042753-exon-sc0003649-1575043694:5185..6327 | Clytia hemisphaerica | exon |
| TCONS_00042753-exon-sc0003649-1575043694:1957..3960 | TCONS_00042753-exon-sc0003649-1575043694:1957..3960 | Clytia hemisphaerica | exon |
| TCONS_00042753-exon-sc0003649-1575043694:1301..1871 | TCONS_00042753-exon-sc0003649-1575043694:1301..1871 | Clytia hemisphaerica | exon |
| TCONS_00042753-exon-sc0003649-1575043694:946..1217 | TCONS_00042753-exon-sc0003649-1575043694:946..1217 | Clytia hemisphaerica | exon |
| TCONS_00042753-exon-sc0003649-1510915933:5185..6327 | TCONS_00042753-exon-sc0003649-1510915933:5185..6327 | Clytia hemisphaerica | exon |
| TCONS_00042753-exon-sc0003649-1510915933:1957..3960 | TCONS_00042753-exon-sc0003649-1510915933:1957..3960 | Clytia hemisphaerica | exon |
| TCONS_00042753-exon-sc0003649-1510915933:1301..1871 | TCONS_00042753-exon-sc0003649-1510915933:1301..1871 | Clytia hemisphaerica | exon |
| TCONS_00042753-exon-sc0003649-1510915933:946..1217 | TCONS_00042753-exon-sc0003649-1510915933:946..1217 | Clytia hemisphaerica | exon |
| TCONS_00042753-exon-sc0003649-1491911889:5185..6327 | TCONS_00042753-exon-sc0003649-1491911889:5185..6327 | Clytia hemisphaerica | exon |
| TCONS_00042753-exon-sc0003649-1491911889:1957..3960 | TCONS_00042753-exon-sc0003649-1491911889:1957..3960 | Clytia hemisphaerica | exon |
| TCONS_00042753-exon-sc0003649-1491911889:1301..1871 | TCONS_00042753-exon-sc0003649-1491911889:1301..1871 | Clytia hemisphaerica | exon |
| TCONS_00042753-exon-sc0003649-1491911889:946..1217 | TCONS_00042753-exon-sc0003649-1491911889:946..1217 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003649 | supercontig | sc0003649:946..6327 - |
Blast
The following BLAST results are available for this feature:
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