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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042722 ID=TCONS_00042722|Name=TCONS_00042722|organism=Clytia hemisphaerica|type=transcript|length=1110bp
CTTTGGTTTTGCTGTTGTCGCACACAAAAAATCACATCAACAAATCGAAC
ACATATCTCAGAAATCGAGAGATAAACATTCTAATACGTATTTTATAAAC
ATTCTCATACGTATTTTATGATTGAGAATAAACACGAACTCACTTGCAGA
ACGTTAAACTTGCTCATCTCACAAGAAATTTTAGTAAACATTGAACCGTT
ATTATAAACATCTCGACCTTCCCCCATCTATCCGTGGATGAACCGCCATT
attcacaaagataaaaaatgtcAACAAACCCGAGCAACGACGCCATGCCG
CCAGCCGTCAGCCGCCCCCCATCCCGTCGATATTATAGAGATAATGGCAC
AACAGCTTCAAATTCAACAACAACTTGCAAATCTCATGACGCAATTCGCT
AACCCGCAACCCCAAAATGGACCGCCACATCGCAGCTCAAAGCCAACCCG
ACCAACAATCGAAGCAGACAGCTCAGATAACGGATGGATTATCTTTGAAG
ATTCATGGTCACGATACAAAGAAATGGCCAAACTCAATAACCAAGCTGAG
ATTCGAAACGAGCTACGATCCACATGCTCATCGAAGGTAAATGAAATGCT
ATTTAACTTTGTGGGACCAGAAGTTCTCAGTACCGCTAGCGAGGCCGTCC
TCCTCAAGTTTATCAAATCTGTAGCCGTTAAGACTGTCCATCCAGAGGTG
TATAGACAGCAATTTTTCAACCTTCGACAAAGTGACTGTGAGAGCGTGAC
ATCATTCATCTCGCGTCTCAAAGCACAAGCCATGCTATGCGATTTTAAAA
CGAACGGAAGTTTTGAATCCGATGATTGCTCCCCATCCTACGCCTCCGAT
ATGATCCCAATTACGCAACCCAACCCATCAATCCAAAGTATTAACAGAAA
TCGCATCTCTGCAAACACTTGAAGATTTGACCACCCGTCTCCTTGCCCTT
GAAGCCACAGATCGCGCATCAACCCAATTCAGATCACCGTTCGAGAATAC
CCCATTCGACGTCGCATATGTCAAATCGTCGTCATTCAAGCCGAGAAGAC
CAACCAACCAAAAGAAACAATGCTCTGGATGTGGTAAACCAATGCACCCA
AACGGACGCT Run BLAST on NCBI protein sequence of TCONS_00042722-protein >TCONS_00042722-protein ID=TCONS_00042722-protein|Name=TCONS_00042722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MAQQLQIQQQLANLMTQFANPQPQNGPPHRSSKPTRPTIEADSSDNGWII
FEDSWSRYKEMAKLNNQAEIRNELRSTCSSKVNEMLFNFVGPEVLSTASE
AVLLKFIKSVAVKTVHPEVYRQQFFNLRQSDCESVTSFISRLKAQAMLCD
FKTNGSFESDDCSPSYASDMIPITQPNPSIQSINRNRISANT Run BLAST on NCBI transcript from alignment at sc0003631:8655..9764 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042722 ID=TCONS_00042722|Name=TCONS_00042722|organism=Clytia hemisphaerica|type=transcript|length=1110bp|location=Sequence derived from alignment at sc0003631:8655..9764 (Clytia hemisphaerica)
AGCGTCCGTTTGGGTGCATTGGTTTACCACATCCAGAGCATTGTTTCTTT
TGGTTGGTTGGTCTTCTCGGCTTGAATGACGACGATTTGACATATGCGAC
GTCGAATGGGGTATTCTCGAACGGTGATCTGAATTGGGTTGATGCGCGAT
CTGTGGCTTCAAGGGCAAGGAGACGGGTGGTCAAATCTTCAAGTGTTTGC
AGAGATGCGATTTCTGTTAATACTTTGGATTGATGGGTTGGGTTGCGTAA
TTGGGATCATATCGGAGGCGTAGGATGGGGAGCAATCATCGGATTCAAAA
CTTCCGTTCGTTTTAAAATCGCATAGCATGGCTTGTGCTTTGAGACGCGA
GATGAATGATGTCACGCTCTCACAGTCACTTTGTCGAAGGTTGAAAAATT
GCTGTCTATACACCTCTGGATGGACAGTCTTAACGGCTACAGATTTGATA
AACTTGAGGAGGACGGCCTCGCTAGCGGTACTGAGAACTTCTGGTCCCAC
AAAGTTAAATAGCATTTCATTTACCTTCGATGAGCATGTGGATCGTAGCT
CGTTTCGAATCTCAGCTTGGTTATTGAGTTTGGCCATTTCTTTGTATCGT
GACCATGAATCTTCAAAGATAATCCATCCGTTATCTGAGCTGTCTGCTTC
GATTGTTGGTCGGGTTGGCTTTGAGCTGCGATGTGGCGGTCCATTTTGGG
GTTGCGGGTTAGCGAATTGCGTCATGAGATTTGCAAGTTGTTGTTGAATT
TGAAGCTGTTGTGCCATTATCTCTATAATATCGACGGGATGGGGGGCGGC
TGACGGCTGGCGGCATGGCGTCGTTGCTCGGGTTTGTTgacattttttat
ctttgtgaatAATGGCGGTTCATCCACGGATAGATGGGGGAAGGTCGAGA
TGTTTATAATAACGGTTCAATGTTTACTAAAATTTCTTGTGAGATGAGCA
AGTTTAACGTTCTGCAAGTGAGTTCGTGTTTATTCTCAATCATAAAATAC
GTATGAGAATGTTTATAAAATACGTATTAGAATGTTTATCTCTCGATTTC
TGAGATATGTGTTCGATTTGTTGATGTGATTTTTTGTGTGCGACAACAGC
AAAACCAAAG Coding sequence (CDS) from alignment at sc0003631:8655..9764 >TCONS_00042722 ID=TCONS_00042722|Name=TCONS_00042722|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at sc0003631:8655..9764 (Clytia hemisphaerica)
TCAAGTGTTTGCAGAGATGCGATTTCTGTTAATACTTTGGATTGATGGGT
TGGGTTGCGTAATTGGGATCATATCGGAGGCGTAGGATGGGGAGCAATCA
TCGGATTCAAAACTTCCGTTCGTTTTAAAATCGCATAGCATGGCTTGTGC
TTTGAGACGCGAGATGAATGATGTCACGCTCTCACAGTCACTTTGTCGAA
GGTTGAAAAATTGCTGTCTATACACCTCTGGATGGACAGTCTTAACGGCT
ACAGATTTGATAAACTTGAGGAGGACGGCCTCGCTAGCGGTACTGAGAAC
TTCTGGTCCCACAAAGTTAAATAGCATTTCATTTACCTTCGATGAGCATG
TGGATCGTAGCTCGTTTCGAATCTCAGCTTGGTTATTGAGTTTGGCCATT
TCTTTGTATCGTGACCATGAATCTTCAAAGATAATCCATCCGTTATCTGA
GCTGTCTGCTTCGATTGTTGGTCGGGTTGGCTTTGAGCTGCGATGTGGCG
GTCCATTTTGGGGTTGCGGGTTAGCGAATTGCGTCATGAGATTTGCAAGT
TGTTGTTGAATTTGAAGCTGTTGTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042722-exon-sc0003631-1491911889:8655..9764 | TCONS_00042722-exon-sc0003631-1491911889:8655..9764 | Clytia hemisphaerica | exon |
| TCONS_00042722-exon-sc0003631-1510915933:8655..9764 | TCONS_00042722-exon-sc0003631-1510915933:8655..9764 | Clytia hemisphaerica | exon |
| TCONS_00042722-exon-sc0003631-1575043694:8655..9764 | TCONS_00042722-exon-sc0003631-1575043694:8655..9764 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003631 | supercontig | sc0003631:8655..9764 . |
Blast
The following BLAST results are available for this feature:
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