TCONS_00042700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042700
Unique NameTCONS_00042700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2111

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042700 ID=TCONS_00042700|Name=TCONS_00042700|organism=Clytia hemisphaerica|type=transcript|length=2111bp
NNGATAACTTTTTTATGGGACACTTTGTGTCAAAAGAATGCAAAACGGAG
CAGCTTCTAATAAATAATTTTCATCCATATATTTTCAGAATGCTCTTCGT
GAAAAAGAAACTGTCTTCGGCATCTACAACAAAAACGATCATTGGAATCT
ATTACTTATATTTCCAAAACAAAAGCAGCTTTGGTTGGCAAACCCAACCG
GTGAAGGAACAATGGAAACAGAAAATGTCGTCAGGACATGGGAGTAGGTT
TCGTTTGTTAACCCTTTGTGcatcttcttatttttttatatgcGGAGCAT
CTTGAGGGGCAtgttagcccccccccctcggatctcaggattgacaagtg
ctatgaacttgaaattttcccCAGTGACAGATATTGACAAAAGAAGACGA
TTTACGATTTTCAGGTCGGCCACCTGTttagttggtattttacagatcaG
AATGTTAAATTAGTGCGATTAATGCGATTGCATCCTTTGGctgaaagatt
acgtcataaaaagtAGCGCGCACATGAAAAGAAGTTGAATGCATTTCAGC
TTTTTTCAACCGTTGCGTCAAATTTTGCCATGGAAAAGCTTCATTTtact
tttgaccaatagcgtggaagctttcgTTGAAAAGAAGCGATCGTACAGCG
CGCAAATGAAGAAAATCTTTGATGGgggttattttgaaaattgtaccCTG
AGTACTACTAAAAACAAAACCGTTTCACTGTAAAGATTGAGAGTTATTAT
TTGCTTCGTGTTGGTAATAGAGAGTTACTTTTTCTTCAAATCGGTAATGG
CTTCAAACTTTAACGAATCCACTTCTTGGACAATGTATTCACAGCAACAT
GCGGTTCAAGAGGATGCTGTCTCGTGTGGTGTTTTCTGTCTGAAGttttt
agaatcgtttctCTAAGGTAGGACATTACCATCAAAAGGTTCGTTTGGCT
CAAAAGACGTTCTTGCGTACCGTCAAAAGATTGGGTTGCAACTTCTCCGC
AGCGGAGGTTATGACACTTGGACCGGAAAATTATGTAGAATTTGTGGTAG
AGAGGATCCACCAAAATGTAATTTTTCAAGTGTTCCCAAATTAACGAACT
GGGTTGAATGTGAAAACTGCATACCAAAAAGATGGTTCCATCTCCTTTGC
CTGGGTAGTGACTCGTCAGCCGAAAAGGAAATGTCATTCGATTGTAATAA
GGAAATAAAGGTAGCAGCTAAGCTTTCCTTGAAAGAAGGACAGCTTCTTT
TGAAGCGAAGAACAAACAAAAGAATAAAGGTTTGTGGAAAAAGGAGAAAT
GGTTGTACGAAAGGGGATATCTCTAAATTACCCTTAGAATCACCAAAAGA
CTTGATCTTCATGAAAAAGGAGAGAAGACCAAAAAGGGATAAACATTGGT
CGTCAGTGGACGAAAACGACTATGTTATGGCTTACGTCCACTACCACATC
GAGTGTGCAGTACAATCGAGTAATAACATTGTCTTGGCAGAAGATGTCAA
CATAACCGAAGAAGAGAGGGTATTTCTGAATGGGAAAGGATTTATTTTAT
AGAACGGCAGATAAATTTTGGTACCAGATTATTAATAGCAAGTAGCTGAT
GCTAAGAAGATGCCCTGTTTTGTGCAGAGTAGTACTCCAGGCTCGCGACA
GTGGTGTTTTTAACCCCTAGCTTACTCCCAGGCTACATCGGCTATTTTCC
AATATGCTGTCCTCTAAGCTTCTGCCtatttaaaattatatttttgatgg
gaaatgaagccacttattttcgATCCAGAACGCCCGAGCGTGGTTTTTAA
TTACCTTTCTGTAAACTGTAAAcctttcttatgttttattttacgaCTTC
GTTATTTTGAAATGCAAAAGCTAACGCCATTAACCCCAACCCATATTATG
TAATCCGGcaatttatgtttatttttagGAGTAGGAACCTAGTATATATA
GAGGTcggatatattttttttaagcaGGCAATTATACAGACAAGTAGATT
TCACACTTCTTCAATTTACTTTCCTAATGTCAgtgtaactttttttttat
ctctAGGAGGTAGTTATATTAAAGATTATTTTCATAGGGAACTAACTTTG
TCTCAAAGTTC
Run BLAST on NCBI

protein sequence of TCONS_00042700-protein

>TCONS_00042700-protein ID=TCONS_00042700-protein|Name=TCONS_00042700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MSFDCNKEIKVAAKLSLKEGQLLLKRRTNKRIKVCGKRRNGCTKGDISKL
PLESPKDLIFMKKERRPKRDKHWSSVDENDYVMAYVHYHIECAVQSSNNI
VLAEDVNITEEERVFLNGKGFIL
Run BLAST on NCBI

transcript from alignment at sc0003613:1567..5173+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042700 ID=TCONS_00042700|Name=TCONS_00042700|organism=Clytia hemisphaerica|type=transcript|length=3607bp|location=Sequence derived from alignment at sc0003613:1567..5173+ (Clytia hemisphaerica)
NNGATAACTTTTTTATGGGACACTTTGTGTCAAAAGAATGCAAAACGGAG
CAGCTTCTAATAAATAATTTTCATCCATATATTTTCAGAATGCTCTTCGT
GAAAAAGAAACTGTCTTCGGCATCTACAACAAAAACGATCATTGGAATCT
ATTAGTAAGAATgagataaaacaaaaatttatggTGATGAAACTTTGGAG
CTAAATGTTAACAATTTGTTCAAATTAGAAGttattctttcaaaatctcT
ATCTTTATCTTTGTAGCTTATATTTCCAAAACAAAAGCAGCTTTGGTTGG
CAAACCCAACCGGTGAAGGAACAATGGAAACAGAAAATGTCGTCAGGACA
TGGGAGTAGGTTTCGTTTGTTAACCCTTTGTGcatcttcttattttttta
tatgcGGAGCATCTTGAGGGGCAtgttagcccccccccctcggatctcag
gattgacaagtgctatgaacttgaaattttcccCAGTGACAGATATTGAC
AAAAGAAGACGATTTACGATTTTCAGGTCGGCCACCTGTttagttggtat
tttacagatcaGAATGTTAAATTAGTGCGATTAATGCGATTGCATCCTTT
GGctgaaagattacgtcataaaaagtAGCGCGCACATGAAAAGAAGTTGA
ATGCATTTCAGCTTTTTTCAACCGTTGCGTCAAATTTTGCCATGGAAAAG
CTTCATTTtacttttgaccaatagcgtggaagctttcgTTGAAAAGAAGC
GATCGTACAGCGCGCAAATGAAGAAAATCTTTGATGGgggttattttgaa
aattgtaccCTGAGTACTACTAAAAACAAAACCGTTTCACTGTAAAGATT
GAGAGTTATTATTTGCTTCGTGTTGGTAATAGAGAGTTACTTTTTCTTCA
AATCGGTAATGGCTTCAAACTTTAACGAATCCACTTCTTGGACAATGTAT
TCACAGCAACATGCGGTTCAAGAGGATGCTGTCTCGTGTGGTGTTTTCTG
TCTGAAGGTAACTTGCTTGAGTGTTTACATGTTTGtaaacaagaatcttg
ttgtgcactGGAAATGTCATAAATTATATTTTCCTGACACGGCGCCTTAT
ACCAAACTTTGTCTCCCTACTTTGCTGTTGTTCCCAGCCCACTCGTGGCG
ATGCATGAACCTTCATAAAATGAGATTTTcctcagattgtttgttttcac
ccaCCCTTAAGAGCTCTTTATATTATTccagtttttagaatcgtttctCT
AAGGTAGGACATTACCATCAAAAGGTTCGTTTGGCTCAAAAGACGTTCTT
GCGTACCGTCAAAAGATTGGGTTGCAACTTCTCCGCAGCGGAGGTATGAT
TAAGCTCTTTTTTCCAGTTAGTACTTCTATTCACCATTTGCCAGCTTAGT
GCTTATATTCAATCACTGAGTTTTATATAGGCTTTACATATCAGGAGTTT
CTCGATCCCCACCTATTTGATCAGAATCTTTTGAACCACACTAACGGTGG
CATTGCATTACGGGTCAGCTCGTTCACAAACACAAAAAAGAGTAAGATTT
GtattgttttttcttattttcattactTTTCAAAGTGTCTTAATATTTCT
TATCTAGTTTGTTCGGTTGATTCCAATAGGTTATGACACTTGGACCGGAA
AATTATGTAGAATTTGTGGTAGAGAGGATCCACCAAAATGTAATTTTTCA
AGTGTTCCCAAATTAACGAACTGGGTATGTTTATAAATTTCTGATTTCTA
ACTGCCAAAACATAATGAATTTTTGTAACGATCAGGCATCCATCAACCAT
TGCCATTGTACATAAAATGTCAAATATTGTTGTAAACGTTGCCTTTCACG
AGTGGGATCAAAGGTGGAAAAGTATCTCTAACTTCTTGTTAGATTAATCC
ATCTATCAGTGTGAAATTCCGGTTCGTACCAAATGATATGGGTATTATGT
TCCTTTTTGAAAACGAGCACTGCTGCTTAATCTTCTAGTTATCTAAGGTA
ATAATTAAAGCAATCACTTTCAGGTTGAATGTGAAAACTGCATACCAAAA
AGATGGTTCCATCTCCTTTGCCTGGGTAGTGACTCGTCAGCCGAAAAGGA
AATGTCATTCGATTGTAATAAGGTGATTTATATCATTTAAAATGTGAAGC
TTGAACTCCATGGGTGTGTTTAAACCAACTGGCATTTGCCATTTGCTCCC
AAGGGATTCTATTGCCacaatttttccattgaataACTTTAATGTAATGG
GAATTGTAAAGTTTGTTCGAGCTCAATCTTTTCTTTCCGGGTTTTTCCTG
TAAGGGATGAATGATGAAGACCTTTTTGAACAAATGAGAAAGATTAGGGA
AAATCAATCTTAACTTAAGGACTTTTCGTTATAATTCCAACAGGAATCTT
GGTACTATCATTGTACTTCTTGATCGATTCTCTTCTAGATATAAAAGCGC
CCTTGCAAACTATCAAATCGGAAATGCAAGCTCTTCCTATCAGATTATTT
TAAGTGTTATGTATCTCTGTTGGGGTAGAGAAATTTAAGGGTACAGTCGT
GTGCCGCTTTAAGTGACCTAAGAAATTGTTATTTTCAAAAGCCAGGTAAA
ACACCCGTTTTCGGGAAAACCCAGTACCCCTCCTGGGGTGTATCGTCGGC
GAGGATTATTGTTAATTTGCTATTATATTTTCTCTTATCTTCCTTAGGAA
ATAAAGGTAGCAGCTAAGCTTTCCTTGAAAGAAGGACAGCTTCTTTTGAA
GCGAAGAACAAACAAAAGAATAAAGGTTTGTGGAAAAAGGAGAAATGGTT
GTACGAAAGGGGATATCTCTAAATTACCCTTAGAATCACCAAAAGACTTG
ATCTTCATGAAAAAGGAGAGAAGACCAAAAAGGGATAAACATTGGTCGTC
AGTGGACGAAAACGACTATGTTATGGCTTACGTCCACTACCACATCGAGT
GTGCAGTACAATCGAGTAATAACATTGTCTTGGCAGAAGATGTCAACATA
ACCGAAGAAGAGAGGGTATTTCTGAATGGGAAAGGATTTATTTTATAGAA
CGGCAGATAAATTTTGGTACCAGATTATTAATAGCAAGTAGCTGATGCTA
AGAAGATGCCCTGTTTTGTGCAGAGTAGTACTCCAGGCTCGCGACAGTGG
TGTTTTTAACCCCTAGCTTACTCCCAGGCTACATCGGCTATTTTCCAATA
TGCTGTCCTCTAAGCTTCTGCCtatttaaaattatatttttgatgggaaa
tgaagccacttattttcgATCCAGAACGCCCGAGCGTGGTTTTTAATTAC
CTTTCTGTAAACTGTAAAcctttcttatgttttattttacgaCTTCGTTA
TTTTGAAATGCAAAAGCTAACGCCATTAACCCCAACCCATATTATGTAAT
CCGGcaatttatgtttatttttagGAGTAGGAACCTAGTATATATAGAGG
TcggatatattttttttaagcaGGCAATTATACAGACAAGTAGATTTCAC
ACTTCTTCAATTTACTTTCCTAATGTCAgtgtaactttttttttatctct
AGGAGGTAGTTATATTAAAGATTATTTTCATAGGGAACTAACTTTGTCTC
AAAGTTC

Coding sequence (CDS) from alignment at sc0003613:1567..5173+

>TCONS_00042700 ID=TCONS_00042700|Name=TCONS_00042700|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at sc0003613:1567..5173+ (Clytia hemisphaerica)
ATGTCATTCGATTGTAATAAGGAAATAAAGGTAGCAGCTAAGCTTTCCTT
GAAAGAAGGACAGCTTCTTTTGAAGCGAAGAACAAACAAAAGAATAAAGG
TTTGTGGAAAAAGGAGAAATGGTTGTACGAAAGGGGATATCTCTAAATTA
CCCTTAGAATCACCAAAAGACTTGATCTTCATGAAAAAGGAGAGAAGACC
AAAAAGGGATAAACATTGGTCGTCAGTGGACGAAAACGACTATGTTATGG
CTTACGTCCACTACCACATCGAGTGTGCAGTACAATCGAGTAATAACATT
GTCTTGGCAGAAGATGTCAACATAACCGAAGAAGAGAGGGTATTTCTGAA
TGGGAAAGGATTTATTTTATAGATGTCATTCGATTGTAATAAGGAAATAA
AGGTAGCAGCTAAGCTTTCCTTGAAAGAAGGACAGCTTCTTTTGAAGCGA
AGAACAAACAAAAGAATAAAGGTTTGTGGAAAAAGGAGAAATGGTTGTAC
GAAAGGGGATATCTCTAAATTACCCTTAGAATCACCAAAAGACTTGATCT
TCATGAAAAAGGAGAGAAGACCAAAAAGGGATAAACATTGGTCGTCAGTG
GACGAAAACGACTATGTTATGGCTTACGTCCACTACCACATCGAGTGTGC
AGTACAATCGAGTAATAACATTGTCTTGGCAGAAGATGTCAACATAACCG
AAGAAGAGAGGGTATTTCTGAATGGGAAAGGATTTATTTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026510XLOC_026510Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042700-proteinTCONS_00042700-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042700-exon-sc0003613-1491911889:1567..1720TCONS_00042700-exon-sc0003613-1491911889:1567..1720Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1510915933:1567..1720TCONS_00042700-exon-sc0003613-1510915933:1567..1720Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1575043694:1567..1720TCONS_00042700-exon-sc0003613-1575043694:1567..1720Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1491911889:1833..2573TCONS_00042700-exon-sc0003613-1491911889:1833..2573Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1510915933:1833..2573TCONS_00042700-exon-sc0003613-1510915933:1833..2573Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1575043694:1833..2573TCONS_00042700-exon-sc0003613-1575043694:1833..2573Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1491911889:2798..2909TCONS_00042700-exon-sc0003613-1491911889:2798..2909Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1510915933:2798..2909TCONS_00042700-exon-sc0003613-1510915933:2798..2909Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1575043694:2798..2909TCONS_00042700-exon-sc0003613-1575043694:2798..2909Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1491911889:3196..3290TCONS_00042700-exon-sc0003613-1491911889:3196..3290Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1510915933:3196..3290TCONS_00042700-exon-sc0003613-1510915933:3196..3290Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1575043694:3196..3290TCONS_00042700-exon-sc0003613-1575043694:3196..3290Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1491911889:3590..3688TCONS_00042700-exon-sc0003613-1491911889:3590..3688Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1510915933:3590..3688TCONS_00042700-exon-sc0003613-1510915933:3590..3688Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1575043694:3590..3688TCONS_00042700-exon-sc0003613-1575043694:3590..3688Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1491911889:4264..5173TCONS_00042700-exon-sc0003613-1491911889:4264..5173Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1510915933:4264..5173TCONS_00042700-exon-sc0003613-1510915933:4264..5173Clytia hemisphaericaexon
TCONS_00042700-exon-sc0003613-1575043694:4264..5173TCONS_00042700-exon-sc0003613-1575043694:4264..5173Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003613supercontigsc0003613:1567..5173 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.186529	0.0909474	0.211197	0.289273	49.0264	49.8847	60.3679	87.9846	55.235	48.7224	33.4329	41.8113	23.3338	22.8163	0.116509	0.182385	4.20954	3.17185	0.555195	0.76952	0.253106	0.238398	0	0.117601	2.81647	6.57741	0.153958	0.110265	0.0622554	0.126754
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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