TCONS_00042645 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042645
Unique NameTCONS_00042645
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042645 ID=TCONS_00042645|Name=TCONS_00042645|organism=Clytia hemisphaerica|type=transcript|length=558bp
GACTTTGAATTTTTCTCATGGaatcaaaatgaattgaaattttatttatg
tGGCTTGGTTTGATTGACTTAGCATTCACATTACTTACATTTTTATGTGG
ATTTATGGAGCATATTTATTACATCATTCAGAGTTTCGCATGCTGgtaag
atagtattttttatcttatttttctgCTACTTTTTGGACACATTTTGTCC
CAGGCATTTTGACACCTATTTTTATGGTAATTTCTAGGTTTTCTAGAGAC
ATTTTTCTAGACTTTTCTAGCCGTTTTGGACATAGTTTTTCCGATATTCT
TGCCTTTCTAGAGACATTTTTCAGGcacattttgtttatttctagacatt
tcttgaaatattctagccttcaacttttattttttaaactttgtcaaact
aaattttgctttcaatttttagttgaaACATTCGTTATCAACACCAAACT
CAATTTACGGCTCCAATTATAAGTCCCGCCACAATGTATACCAAAAGTTG
TCgccattttttcatcaaagttttcccgtCGCAAAGTCCGTACTTGGTTG
TACCCGTA
Run BLAST on NCBI

transcript from alignment at sc0003568:7643..8200

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042645 ID=TCONS_00042645|Name=TCONS_00042645|organism=Clytia hemisphaerica|type=transcript|length=558bp|location=Sequence derived from alignment at sc0003568:7643..8200 (Clytia hemisphaerica)
TACGGGTACAACCAAGTACGGACTTTGCGacgggaaaactttgatgaaaa
aatggcGACAACTTTTGGTATACATTGTGGCGGGACTTATAATTGGAGCC
GTAAATTGAGTTTGGTGTTGATAACGAATGTttcaactaaaaattgaaag
caaaatttagtttgacaaagtttaaaaaataaaagttgaaggctagaata
tttcaagaaatgtctagaaataaacaaaatgtgCCTGAAAAATGTCTCTA
GAAAGGCAAGAATATCGGAAAAACTATGTCCAAAACGGCTAGAAAAGTCT
AGAAAAATGTCTCTAGAAAACCTAGAAATTACCATAAAAATAGGTGTCAA
AATGCCTGGGACAAAATGTGTCCAAAAAGTAGcagaaaaataagataaaa
aatactatcttacCAGCATGCGAAACTCTGAATGATGTAATAAATATGCT
CCATAAATCCACATAAAAATGTAAGTAATGTGAATGCTAAGTCAATCAAA
CCAAGCCacataaataaaatttcaattcattttgattCCATGAGAAAAAT
TCAAAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026459XLOC_026459Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042645-exon-sc0003568-1491911889:7643..8200TCONS_00042645-exon-sc0003568-1491911889:7643..8200Clytia hemisphaericaexon
TCONS_00042645-exon-sc0003568-1510915933:7643..8200TCONS_00042645-exon-sc0003568-1510915933:7643..8200Clytia hemisphaericaexon
TCONS_00042645-exon-sc0003568-1575043694:7643..8200TCONS_00042645-exon-sc0003568-1575043694:7643..8200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003568supercontigsc0003568:7643..8200 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.65404	3.07303	2.99259	2.02692	0.411264	0.541644	0.65347	0.423667	0.685305	1.27329	0.205981	0.473914	1.35216	0.939355	0.0577233	0.123892	0.170558	0.391088	0	0.226158	0.491431	0.143822	0.815893	0.847731	0.436572	0.38963	0.975728	0.892563	0.564148	0.459822
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042645 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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