TCONS_00042635 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042635
Unique NameTCONS_00042635
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length694

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042635 ID=TCONS_00042635|Name=TCONS_00042635|organism=Clytia hemisphaerica|type=transcript|length=694bp
ATTTCCTGTTTATAAATCATAAAGAGTACATCTCGTACTAAATAGTAGCA
ACATAAATTACCCTGAGGTGTATttgatcgagaaaaaaaaatcgtaGCTT
AGGTTTTTACACATCAGTTTAAAAACGTAAATTGATAATTTGATTTGAAG
AAGCTATGGTTGCTTCCCTGATGCTAAAATGCACACTGTGATTTGAAAAG
CGAAGTGGGAATAATTCCGCTTCAGATCGTTAGATAGGTTTCGTTCCTAG
ATATAAATAAACTGATAGATATAAATAAACTAGAAGATATAATAAACAGT
ATAtattaaataatattttcttattcaGGACTATAATTTCAGGATTTTGG
GACAAAATTTATGTTCGAAAAGACGCTGTAAAACACTGAAAAGATTCACA
GAACATTCATTGATGACTCGAAAATGATTCTGAACAAGCTTGATTGCGTC
TCATGATTTATGATGTTTGTCTCATACGAATAGAATTAGTTTTAATAAAT
TCCTAATCaaataataatataatttttttttttttttttattttcttaac
cTATGAATCCTTCCTCAGGCAGGCtctcaaacaaaaagaaattttgcgtG
ATATGGGGTACTGTTAGCTAAACTTCTCCCATTCACTTTATTTCTTCTTG
TTATAACTTCAATTTCACATTTGTCTCGCGCTTGTGGAGAGAAt
Run BLAST on NCBI

transcript from alignment at sc0003560:10244..10937

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042635 ID=TCONS_00042635|Name=TCONS_00042635|organism=Clytia hemisphaerica|type=transcript|length=694bp|location=Sequence derived from alignment at sc0003560:10244..10937 (Clytia hemisphaerica)
aTTCTCTCCACAAGCGCGAGACAAATGTGAAATTGAAGTTATAACAAGAA
GAAATAAAGTGAATGGGAGAAGTTTAGCTAACAGTACCCCATATCacgca
aaatttctttttgtttgagaGCCTGCCTGAGGAAGGATTCATAggttaag
aaaataaaaaaaaaaaaaaaaattatattattatttGATTAGGAATTTAT
TAAAACTAATTCTATTCGTATGAGACAAACATCATAAATCATGAGACGCA
ATCAAGCTTGTTCAGAATCATTTTCGAGTCATCAATGAATGTTCTGTGAA
TCTTTTCAGTGTTTTACAGCGTCTTTTCGAACATAAATTTTGTCCCAAAA
TCCTGAAATTATAGTCCtgaataagaaaatattatttaataTATACTGTT
TATTATATCTTCTAGTTTATTTATATCTATCAGTTTATTTATATCTAGGA
ACGAAACCTATCTAACGATCTGAAGCGGAATTATTCCCACTTCGCTTTTC
AAATCACAGTGTGCATTTTAGCATCAGGGAAGCAACCATAGCTTCTTCAA
ATCAAATTATCAATTTACGTTTTTAAACTGATGTGTAAAAACCTAAGCta
cgatttttttttctcgatcaaATACACCTCAGGGTAATTTATGTTGCTAC
TATTTAGTACGAGATGTACTCTTTATGATTTATAAACAGGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026449XLOC_026449Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042635-exon-sc0003560-1491911889:10244..10937TCONS_00042635-exon-sc0003560-1491911889:10244..10937Clytia hemisphaericaexon
TCONS_00042635-exon-sc0003560-1510915933:10244..10937TCONS_00042635-exon-sc0003560-1510915933:10244..10937Clytia hemisphaericaexon
TCONS_00042635-exon-sc0003560-1575043694:10244..10937TCONS_00042635-exon-sc0003560-1575043694:10244..10937Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003560supercontigsc0003560:10244..10937 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.07315	0.213998	0.0828242	0	0.493234	0.0779521	0.564275	0.440223	0.616421	0	0.222332	0.243587	0.194599	0.30314	0.249222	0	0.109827	0.253317	0	0.325481	1.20233	0.724446	0.335489	0.228756	0.398089	0.490652	0.200606	0.428185	0.0811908	0.0827206
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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