|
|
Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL75180_cuf0 >transcript:BL75180_cuf0-protein ID=transcript:BL75180_cuf0-protein|Name=transcript:BL75180_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=738bp
MASDREEHYLILGVPTDASHEEIVDAYMKEVTHYEKNSKRRRKDPIFKEA
STQYREVSKAFVVLSDATRRQLYDDGLPASKSPKCTNKNSSQRTDYQVKF
NGQSVTIFVPTNLTKSWITTCEEHYGILATDGGRNGQQIKTSFVDPKSRQ
PMGSVSITCYESSDTLLIQGSAYLLWLSEVYPELKKSISLTPNNAAAHVQ
ASMPEPNASSTSSDSTSVTASLPLCPTCQEPVESDICACNTVPKDVLDVN
SNNINSLESQTGATGDEESKMAHKSVTADYSIVQESVTKLEACLADCISD
RKLFEDSVMQKISAMEVRVKTCERPHTCDGLSTEEKDRLLSDIAHLGKVN
RELELKVKSLELRHERLSTAVRKADAATPQRQMKSAETQTTADSDRADNL
LREVATVTVQNRFQVLDSKHDNSDAIFDISHGSAKHDRNNEDLCGYRGNQ
STQRSVKSGAAAQVSRTKQPTGVTSDPPRDRRHTNLQNKEAPLDLLILGD
SNTRPIQTDILYPNKHVRKELTFNLTQATTYIEDTTIPDPKAIFFHVGTN
DARDLKEPTAVSEGFRKLITSSHNKFPHTPLVISSVLPRDDRNLQAVGDS
VNSFLQVIAEESSYIHLADNNNLSEKGTINKSLFNSDGYHLNRYGIRVLA
SNIKKSVNPLIGLGQYIGRRARSENPTPADAPKKGTINKSLFNSDGYHLN
RYGIRVLASNIKKTVNPLIGLGQYIGRRARSENPTPAD Run BLAST on NCBI mRNA from alignment at xpSc0040093:3863..6305+ Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL75180_cuf0 ID=transcript:BL75180_cuf0|Name=transcript:BL75180_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=2443bp|location=Sequence derived from alignment at xpSc0040093:3863..6305+ (Branchiostoma lanceolatum)
CCAAGATGGCGACGGAGGTGGGACGCGCGATTACACGCTCCTGCTGAAAA
GTTGTTTATTGTGTCTTTTCCTAGTTGTTTAAGCAATAGTTACTTCAAAA
GTGTTTGTAAAAGTTACCACGTTTATTACCCTCCGACTTGAGGGTAATTT
TAGGGCTTTTTTTGCCAAGTTTTTTCGAGTTTTAGTAAATTTGACGACTT
CAGACCCAAGCGGACCCAAGCCGGACGCCATGGCGAGCGACAGAGAAGAG
CACTACCTCATTCTAGGAGTCCCGACCGACGCCAGTCATGAAGAAATCGT
CGATGCTTACATGAAGGAGGTCACCCACTACGAAAAGAATTCCAAACGCA
GAAGAAAAGATCCTATCTTCAAGGAAGCTAGCACACAGTATCGGGAGGTA
AGCAAGGCCTTTGTTGTTTTGTCCGACGCCACTCGCAGACAACTATATGA
CGACGGCCTTCCTGCCTCAAAATCTCCCAAGTGCACAAACAAGAACAGTA
GTCAAAGAACTGACTATCAAGTCAAGTTTAATGGGCAAAGCGTTACCATC
TTTGTACCCACTAATCTCACGAAATCTTGGATTACAACATGCGAGGAACA
CTATGGCATCCTAGCGACAGACGGAGGCAGAAACGGCCAACAGATCAAGA
CATCTTTTGTTGATCCTAAGTCGCGCCAACCCATGGGTTCCGTCAGCATC
ACATGCTACGAGTCATCTGACACACTACTGATTCAAGGTTCCGCTTATTT
ATTGTGGCTTTCCGAAGTTTATCCCGAACTCAAGAAGTCCATAAGTCTCA
CCCCAAACAATGCCGCCGCTCACGTACAAGCGTCAATGCCGGAACCCAAC
GCGAGTTCTACATCGTCGGACTCGACATCTGTCACTGCCAGCCTTCCACT
TTGTCCTACATGTCAAGAACCGGTGGAGTCGGACATTTGTGCTTGTAACA
CAGTACCTAAAGATGTGCTGGACGTCAACAGCAACAATATCAATAGTTTG
GAAAGTCAAACTGGTGCTACAGGTGACGAGGAATCCAAGATGGCGCACAA
GAGCGTCACCGCTGATTACTCTATTGTTCAAGAGAGTGTAACTAAACTGG
AAGCATGTCTTGCAGACTGTATCTCAGACAGGAAATTGTTTGAAGACTCT
GTGATGCAAAAGATTTCCGCGATGGAAGTCAGGGTTAAAACATGTGAGCG
GCCCCATACATGTGACGGCCTTTCTACTGAAGAGAAGGACAGACTTTTGA
GCGACATAGCACACCTGGGCAAAGTCAATCGTGAGCTTGAACTCAAGGTC
AAGTCGTTAGAACTAAGGCATGAGAGGCTATCTACAGCAGTACGTAAAGC
TGATGCGGCCACCCCACAACGTCAGATGAAGTCAGCGGAAACACAAACGA
CGGCTGATTCAGATCGCGCTGACAATCTGTTACGTGAAGTAGCAACTGTC
ACTGTACAGAACAGATTTCAGGTCCTTGATTCTAAACATGACAATTCCGA
CGCCATATTTGACATTTCACATGGAAGCGCAAAGCATGACAGGAACAATG
AAGACCTTTGCGGATACCGAGGCAATCAAAGCACTCAAAGAAGTGTGAAG
AGTGGAGCAGCTGCTCAAGTATCAAGGACAAAACAACCTACCGGTGTGAC
TAGCGACCCCCCGAGAGACAGAAGACACACAAATCTACAAAACAAAGAAG
CACCCCTGGACTTGCTAATCCTTGGAGATTCAAACACAAGGCCTATTCAA
ACAGACATCCTGTACCCGAACAAACATGTAAGAAAGGAATTAACTTTCAA
CCTGACTCAGGCTACAACATACATTGAAGACACAACAATTCCGGATCCAA
AGGCGATCTTCTTTCACGTTGGTACCAACGATGCTCGTGACTTGAAGGAG
CCAACAGCTGTATCTGAAGGTTTCCGAAAGTTGATCACTTCATCCCACAA
CAAGTTTCCTCACACACCCCTGGTCATCTCCTCAGTCCTACCGAGAGACG
ACCGCAATCTGCAGGCAGTAGGAGACAGCGTAAACTCGTTTCTACAAGTC
ATAGCGGAAGAGTCAAGCTACATTCACCTAGCTGACAACAACAATCTGTC
CGAGAAAGGAACAATTAACAAGTCACTTTTCAACTCTGACGGCTACCATC
TAAACAGATACGGGATTCGAGTCTTAGCCTCCAACATTAAGAAATCTGTC
AACCCGCTCATAGGCCTAGGCCAATACATAGGTAGAAGAGCTCGCTCGGA
GAACCCAACACCTGCCGACGCACCAAAGAAAGGNACAATCAACAAGTCAC
TTTTCAACTCTGACGGCTACCATCTAAACAGATACGGGATTCGAGTCTTA
GCCTCTAACATTAAGAAAACTGTCAACCCGCTCATAGGCCTAGGCCAATA
CATAGGTAGAAGAGCTCGCTCGGAGAACCCAACACCTGCCGAC Coding sequence (CDS) from alignment at xpSc0040093:3863..6305+ >transcript:BL75180_cuf0 ID=transcript:BL75180_cuf0|Name=transcript:BL75180_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=2214bp|location=Sequence derived from alignment at xpSc0040093:3863..6305+ (Branchiostoma lanceolatum)
ATGGCGAGCGACAGAGAAGAGCACTACCTCATTCTAGGAGTCCCGACCGA
CGCCAGTCATGAAGAAATCGTCGATGCTTACATGAAGGAGGTCACCCACT
ACGAAAAGAATTCCAAACGCAGAAGAAAAGATCCTATCTTCAAGGAAGCT
AGCACACAGTATCGGGAGGTAAGCAAGGCCTTTGTTGTTTTGTCCGACGC
CACTCGCAGACAACTATATGACGACGGCCTTCCTGCCTCAAAATCTCCCA
AGTGCACAAACAAGAACAGTAGTCAAAGAACTGACTATCAAGTCAAGTTT
AATGGGCAAAGCGTTACCATCTTTGTACCCACTAATCTCACGAAATCTTG
GATTACAACATGCGAGGAACACTATGGCATCCTAGCGACAGACGGAGGCA
GAAACGGCCAACAGATCAAGACATCTTTTGTTGATCCTAAGTCGCGCCAA
CCCATGGGTTCCGTCAGCATCACATGCTACGAGTCATCTGACACACTACT
GATTCAAGGTTCCGCTTATTTATTGTGGCTTTCCGAAGTTTATCCCGAAC
TCAAGAAGTCCATAAGTCTCACCCCAAACAATGCCGCCGCTCACGTACAA
GCGTCAATGCCGGAACCCAACGCGAGTTCTACATCGTCGGACTCGACATC
TGTCACTGCCAGCCTTCCACTTTGTCCTACATGTCAAGAACCGGTGGAGT
CGGACATTTGTGCTTGTAACACAGTACCTAAAGATGTGCTGGACGTCAAC
AGCAACAATATCAATAGTTTGGAAAGTCAAACTGGTGCTACAGGTGACGA
GGAATCCAAGATGGCGCACAAGAGCGTCACCGCTGATTACTCTATTGTTC
AAGAGAGTGTAACTAAACTGGAAGCATGTCTTGCAGACTGTATCTCAGAC
AGGAAATTGTTTGAAGACTCTGTGATGCAAAAGATTTCCGCGATGGAAGT
CAGGGTTAAAACATGTGAGCGGCCCCATACATGTGACGGCCTTTCTACTG
AAGAGAAGGACAGACTTTTGAGCGACATAGCACACCTGGGCAAAGTCAAT
CGTGAGCTTGAACTCAAGGTCAAGTCGTTAGAACTAAGGCATGAGAGGCT
ATCTACAGCAGTACGTAAAGCTGATGCGGCCACCCCACAACGTCAGATGA
AGTCAGCGGAAACACAAACGACGGCTGATTCAGATCGCGCTGACAATCTG
TTACGTGAAGTAGCAACTGTCACTGTACAGAACAGATTTCAGGTCCTTGA
TTCTAAACATGACAATTCCGACGCCATATTTGACATTTCACATGGAAGCG
CAAAGCATGACAGGAACAATGAAGACCTTTGCGGATACCGAGGCAATCAA
AGCACTCAAAGAAGTGTGAAGAGTGGAGCAGCTGCTCAAGTATCAAGGAC
AAAACAACCTACCGGTGTGACTAGCGACCCCCCGAGAGACAGAAGACACA
CAAATCTACAAAACAAAGAAGCACCCCTGGACTTGCTAATCCTTGGAGAT
TCAAACACAAGGCCTATTCAAACAGACATCCTGTACCCGAACAAACATGT
AAGAAAGGAATTAACTTTCAACCTGACTCAGGCTACAACATACATTGAAG
ACACAACAATTCCGGATCCAAAGGCGATCTTCTTTCACGTTGGTACCAAC
GATGCTCGTGACTTGAAGGAGCCAACAGCTGTATCTGAAGGTTTCCGAAA
GTTGATCACTTCATCCCACAACAAGTTTCCTCACACACCCCTGGTCATCT
CCTCAGTCCTACCGAGAGACGACCGCAATCTGCAGGCAGTAGGAGACAGC
GTAAACTCGTTTCTACAAGTCATAGCGGAAGAGTCAAGCTACATTCACCT
AGCTGACAACAACAATCTGTCCGAGAAAGGAACAATTAACAAGTCACTTT
TCAACTCTGACGGCTACCATCTAAACAGATACGGGATTCGAGTCTTAGCC
TCCAACATTAAGAAATCTGTCAACCCGCTCATAGGCCTAGGCCAATACAT
AGGTAGAAGAGCTCGCTCGGAGAACCCAACACCTGCCGACGCACCAAAGA
AAGGNACAATCAACAAGTCACTTTTCAACTCTGACGGCTACCATCTAAAC
AGATACGGGATTCGAGTCTTAGCCTCTAACATTAAGAAAACTGTCAACCC
GCTCATAGGCCTAGGCCAATACATAGGTAGAAGAGCTCGCTCGGAGAACC
CAACACCTGCCGAC
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| xpSc0040093 | genome | xpSc0040093:3863..6305 + |
Properties
| Property Name | Value |
|---|
| Transcript id | BL75180_cuf0 |
| Biotype | protein_coding |
|
