TCONS_00042552 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042552
Unique NameTCONS_00042552
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length482

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042552 ID=TCONS_00042552|Name=TCONS_00042552|organism=Clytia hemisphaerica|type=transcript|length=482bp
TGACAAGtcttacttgaacaaaaaataacaaattttttccaGTATGAAAA
CAGTAGTTTCAAACTAGCCATGggatatgcatgttagcctccactgtact
gatgcaagttacccaatctcaagGTAGTcctaattttccaaaaaagttaa
aaaaaaaacacccaaaaaagtaaataatacTCTTGTTTAACCTTGGAAGC
CATCAGTGCTAGGATGCAAAATACCAAACTGTTTCGTGCATTCATTGTAA
ATATGAGACACTCAGTTTGtctccttttcttttttctttttttctgcttG
TCTGTTGTATGTCCTGGTTGGTATGTCTTCTCCTTGATGCTTGGTGAAAT
CCTTTCTAAATTCTTgggaatttttgcttttgaTATTGTTGAGTTTCGAT
ACTGGTGTATTTCTTTTTCCTTTCTGACGTCATACACCTCTATTGAATAT
TATTTCGGAACCGTTTCAGCTCTGAATTGGAA
Run BLAST on NCBI

transcript from alignment at sc0003485:10383..10864

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042552 ID=TCONS_00042552|Name=TCONS_00042552|organism=Clytia hemisphaerica|type=transcript|length=482bp|location=Sequence derived from alignment at sc0003485:10383..10864 (Clytia hemisphaerica)
TTCCAATTCAGAGCTGAAACGGTTCCGAAATAATATTCAATAGAGGTGTA
TGACGTCAGAAAGGAAAAAGAAATACACCAGTATCGAAACTCAACAATAt
caaaagcaaaaattcccAAGAATTTAGAAAGGATTTCACCAAGCATCAAG
GAGAAGACATACCAACCAGGACATACAACAGACaagcagaaaaaaagaaa
aaagaaaaggagaCAAACTGAGTGTCTCATATTTACAATGAATGCACGAA
ACAGTTTGGTATTTTGCATCCTAGCACTGATGGCTTCCAAGGTTAAACAA
GAgtattatttacttttttgggtgttttttttttaacttttttggaaaat
taggACTACcttgagattgggtaacttgcatcagtacagtggaggctaac
atgcatatccCATGGCTAGTTTGAAACTACTGTTTTCATACtggaaaaaa
tttgttattttttgttcaagtaagaCTTGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026371XLOC_026371Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042552-exon-sc0003485-1491911889:10383..10864TCONS_00042552-exon-sc0003485-1491911889:10383..10864Clytia hemisphaericaexon
TCONS_00042552-exon-sc0003485-1510915933:10383..10864TCONS_00042552-exon-sc0003485-1510915933:10383..10864Clytia hemisphaericaexon
TCONS_00042552-exon-sc0003485-1575043694:10383..10864TCONS_00042552-exon-sc0003485-1575043694:10383..10864Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003485supercontigsc0003485:10383..10864 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.1037	8.53316	17.9355	13.5458	8.99096	5.6469	5.21182	7.29994	9.63845	14.0964	13.1461	15.3478	13.2431	13.9443	10.847	12.4156	9.69862	11.7264	13.2976	22.1311	10.7596	10.5473	10.3269	10.7072	7.15547	5.40772	15.0714	12.8489	11.2179	11.3862
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042552 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top