TCONS_00042551 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042551
Unique NameTCONS_00042551
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length998

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042551 ID=TCONS_00042551|Name=TCONS_00042551|organism=Clytia hemisphaerica|type=transcript|length=998bp
NNatcttttattcaatttttcaagattGAAAGTTACAATTCCTTATTGCG
GAACGTGCGTTAGAATTTCTCTACTAAATTGCGTTTTATTTCATATGTAC
TGCTTTAAAACATTATCTTTACCACTATTATTCCAAAGACCCCTGTTTCA
CAAACCGGTTGGGAAACCCATCCCACTGAAAAATCTAGCCAAAATGTTGG
TCACAATGGGAAAAATACCATACAGTTTCAGCTCCACTGGGAAAGTTTTA
TTATTTCATCCCCATGCAATCTAAGAAAATGCATCTCACtagaatgttta
aaaaaatagtGGAAAAAACTTCGACTTCGACTTCCACTTCCActggggtt
gtgagacaggggtgtttcaaaATCACTATCTCAAGTCTTCTCTTTGAACT
TTTCTTCTTGTTGGTTAAACAGTTTAGTATCCTTTCAGGGGGAGTTTAAC
AATAGTTTTTACAAATTACATATTTTATAGTCTCCTGTGCAAGGTTTACA
CAGGTAAAGAAGTAGTTTTAGTattcttatttttattattatatagTCTG
CTGTGCAAGATTTACACAGTTATAGAAATGGCTTTATTATATAGTCTGCT
GTGCAAGGTTTACACAGTTATAGAAATAGCTTTATTATATAGTCTCCTGT
GCAAGGTTTACACAGTTATAGAAATAGCTTTATTATATAGTCTGCTGTGC
AAGGTTTACACAGTTATAGAAATAGCTTTATTATATAGTCTCCTGTGCAA
GGTTTACACAGGTATGTGTAATATTATATACCTATACATATAGGCAAAAA
AAAAGATCCACAATAATTTCgcataaaactgaaagaaaccTATTTCATTA
AGAGTACTcatgtttttgaactttttgtacAATTCAATACTTTTGAAGCG
TATATGGATTACAGAGTTTACTTTATGAAGTTGACGCTATCGAGTATTGG
ATGCTTTCATCTGTTGGAAAATCGTATTGGATTCGTAATTCAAACCCG
Run BLAST on NCBI

transcript from alignment at sc0003484:451..1976-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042551 ID=TCONS_00042551|Name=TCONS_00042551|organism=Clytia hemisphaerica|type=transcript|length=1526bp|location=Sequence derived from alignment at sc0003484:451..1976- (Clytia hemisphaerica)
NNATCTTTTATTCAATTTTTCAAGATTGAAAGTTACAATTCCTTATTGCG
GAACGTGCGTTAGAATTTCTCTACTAAATTGCGTTTTATTTCATATGTAC
TGCTTTAAAACATTATCTTTACCACTATTATTCCAAAGACCCCTGTTTCA
CAAACCGGTTGGGAAACCCATCCCACTGAAAAATCTAGCCAAAATGTTGG
TCACAATGGGAAAAATACCATACAGTTTCAGCTCCACTGGGAAAGTTTTA
TTATTTCATCCCCATGCAATCTAAGAAAATGCATCTCACTAGAATGTTTA
AAAAAATAGTGGAAAAAACTTCGACTTCGACTTCCACTTCCACTGGGGTT
GTGAGACAGGGGTGTTTCAAAATCACTATCTCAAGTCTTCTCTTTGAACT
TTTCTTCTTGTTGGTTAAACAGTTTAGTATCCTTTCAGGGGGAGTTTAAC
AATAGTTTTTACAAATTACATATTTTATAGTCTCCTGTGCAAGGTTTACA
CAGGTAAAGAAGTAGTTTTAGTATTCTTATTTTTATTATTATATAGTCTG
CTGTGCAAGATTTACACAGTTATAGAAATGGCTTTATTATATAGTCTGCT
GTGCAAGGTTTACACAGTTATAGAAATAGCTTTATTATATAGTCTCCTGT
GCAAGGTTTACACAGTTATAGAAATAGCTTTATTATATAGTCTGCTGTGC
AAGGTTTACACAGTTATAGAAATAGCTTTATTATATAGTCTCCTGTGCAA
GGTTTACACAGGTATGTGTAATATTATATACCTATACATATAGGCAAAAA
AAAAGATCCACAATAATTTCGCATAAAACTGAAAGAAACCTATTTCATTA
AGAGTACTCATGTTTTTGAACTTTTTGTACAATTCAATACTTTTGAAGCG
TATATGGATTACAGAGTTTACTTTATGAAGGTAGTGATAGTTCATCGTAT
ATTTTTGAATCTCTTATGATTAAACTTACCTAGGTAATAACTTGGATCAC
TTTTCCATGATTTTTCATTTAGTGGTGTGATGTAACAATCAAAATGGTGA
TGAGAAAGGACAGTATTGAAAATCGGTCACTATTACACGCTACGAAATTG
GGTCGTATTATTAAATATCTTGAGATGTATAATACTTTCTTTTTAATACA
ATTAAAAGCCTAAAACATGTTTCTTTTATTAGGGTGTTAATGCAAGTATA
AAAATGAAATTCCATAAAAAAAATTTCCTTATGTTGAGATAATATCGATA
TCCAACCGCCTACGCTTCACAACCGTGAAGAAAAACCTCACTGGTTTGAT
CCTACTACCTGAAGGTGACTTTCGCGGGAATTAATTTTCGGCAAAAAGAG
GGTGTCTATCGCGAAAGTTAGTTCCGCAAAATACGCCAAATTAGAACCCT
CGCACCGCAACAATTAGTTCCCTTACGGTATTAAAGACTTACCCAATTTA
CATTTCAGTTGACGCTATCGAGTATTGGATGCTTTCATCTGTTGGAAAAT
CGTATTGGATTCGTAATTCAAACCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026370XLOC_026370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042551-exon-sc0003484-1575043694:1047..1976TCONS_00042551-exon-sc0003484-1575043694:1047..1976Clytia hemisphaericaexon
TCONS_00042551-exon-sc0003484-1575043694:451..518TCONS_00042551-exon-sc0003484-1575043694:451..518Clytia hemisphaericaexon
TCONS_00042551-exon-sc0003484-1510915933:1047..1976TCONS_00042551-exon-sc0003484-1510915933:1047..1976Clytia hemisphaericaexon
TCONS_00042551-exon-sc0003484-1510915933:451..518TCONS_00042551-exon-sc0003484-1510915933:451..518Clytia hemisphaericaexon
TCONS_00042551-exon-sc0003484-1491911889:1047..1976TCONS_00042551-exon-sc0003484-1491911889:1047..1976Clytia hemisphaericaexon
TCONS_00042551-exon-sc0003484-1491911889:451..518TCONS_00042551-exon-sc0003484-1491911889:451..518Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003484supercontigsc0003484:451..1976 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.625386	0	0	0	0	0.176859	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4.70818e-09
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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