TCONS_00042461 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042461
Unique NameTCONS_00042461
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042461 ID=TCONS_00042461|Name=TCONS_00042461|organism=Clytia hemisphaerica|type=transcript|length=325bp
GCAAAAACCAAATAAGTTTCCTCTGGAAAAGGTAAAAAGGGCTGAGGAAC
AAAATCACACCAATGTTGATTATGATGAGGACATGACCTACACTTTAACG
GCTGAGGATATCAAGTTGGCAAACGAACGCATCCGTAAAGTGATCTTCAC
TCCAGATTGTAATGGATTCAAGGGTGATGTTTTTACCAAAACATGTGATG
TTTTAAAGAATCATCATGGATGGCAAGAGTACACCGTTGAGAATCTCTGG
ACATATGCTCTGCGTGGCTGCCTTCCAGAAAAGCAACAAAGAACACTGAC
GTACTTTTTTGCCGTTTTGACGCAT
Run BLAST on NCBI

protein sequence of TCONS_00042461-protein

>TCONS_00042461-protein ID=TCONS_00042461-protein|Name=TCONS_00042461-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
QKPNKFPLEKVKRAEEQNHTNVDYDEDMTYTLTAEDIKLANERIRKVIFT
PDCNGFKGDVFTKTCDVLKNHHGWQEYTVENLWTYALRGCLPEKQQRTLT
YFFAVLTH
Run BLAST on NCBI

transcript from alignment at sc0003439:8690..9240-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042461 ID=TCONS_00042461|Name=TCONS_00042461|organism=Clytia hemisphaerica|type=transcript|length=551bp|location=Sequence derived from alignment at sc0003439:8690..9240- (Clytia hemisphaerica)
GCAAAAACCAAATAAGTTTCCTCTGGAAAAGGTAAAAAGGGCTGAGGAAC
AAAATCACACCAATGTTGATTATGATGAGGACATGACCTACACTTTAACG
GCTGAGGATATCAAGTTGGCAAACGAACGCATCCGTAAAGTGATCTTCAC
TCCAGATTGTAATGGATTCAAGGGTGATGTTTTTACCAAAACATGTGATG
TTTTAAAGAATCATCATGGATGGCAAGAGGTGAGACTTGATTATTTTTTG
AATTTCAAGAATATTCTTGGATTTGAACTCCTTATTAAAGTTTATCATGC
ATCGACTAGAACTTATGATACCCTTTGCCTTACCTTTACAATTTCAAAAG
CGAAGATTTAACTTTTCAAGTGAAAGGTCTTCATACTCAATTTGTACTCG
AGTCAAACTATTCATTCACCTGTATAAAGGATGGTTATCCTATTATATAT
TCTAGTACACCGTTGAGAATCTCTGGACATATGCTCTGCGTGGCTGCCTT
CCAGAAAAGCAACAAAGAACACTGACGTACTTTTTTGCCGTTTTGACGCA
T

Coding sequence (CDS) from alignment at sc0003439:8690..9240-

>TCONS_00042461 ID=TCONS_00042461|Name=TCONS_00042461|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0003439:8690..9240- (Clytia hemisphaerica)
TACACCGTTGAGAATCTCTGGACATATGCTCTGCGTGGCTGCCTTCCAGA
AAAGCAACAAAGAACACTGACGTACTTTTTTGCCGTTTTGACGCATCAAA
AACCAAATAAGTTTCCTCTGGAAAAGGTAAAAAGGGCTGAGGAACAAAAT
CACACCAATGTTGATTATGATGAGGACATGACCTACACTTTAACGGCTGA
GGATATCAAGTTGGCAAACGAACGCATCCGTAAAGTGATCTTCACTCCAG
ATTGTAATGGATTCAAGGGTGATGTTTTTACCAAAACATGTGATGTTTTA
AAGAATCATCATGGATGGCAAGAGTACACCGTTGAGAATCTCTGGACATA
TGCTCTGCGTGGCTGCCTTCCAGAAAAGCAACAAAGAACACTGACGTACT
TTTTTGCCGTTTTGACGCATCAAAAACCAAATAAGTTTCCTCTGGAAAAG
GTAAAAAGGGCTGAGGAACAAAATCACACCAATGTTGATTATGATGAGGA
CATGACCTACACTTTAACGGCTGAGGATATCAAGTTGGCAAACGAACGCA
TCCGTAAAGTGATCTTCACTCCAGATTGTAATGGATTCAAGGGTGATGTT
TTTACCAAAACATGTGATGTTTTAAAGAATCATCATGGATGGCAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026295XLOC_026295Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042461-proteinTCONS_00042461-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042461-exon-sc0003439-1575043694:9012..9240TCONS_00042461-exon-sc0003439-1575043694:9012..9240Clytia hemisphaericaexon
TCONS_00042461-exon-sc0003439-1575043694:8690..8785TCONS_00042461-exon-sc0003439-1575043694:8690..8785Clytia hemisphaericaexon
TCONS_00042461-exon-sc0003439-1510915933:9012..9240TCONS_00042461-exon-sc0003439-1510915933:9012..9240Clytia hemisphaericaexon
TCONS_00042461-exon-sc0003439-1510915933:8690..8785TCONS_00042461-exon-sc0003439-1510915933:8690..8785Clytia hemisphaericaexon
TCONS_00042461-exon-sc0003439-1491911889:9012..9240TCONS_00042461-exon-sc0003439-1491911889:9012..9240Clytia hemisphaericaexon
TCONS_00042461-exon-sc0003439-1491911889:8690..8785TCONS_00042461-exon-sc0003439-1491911889:8690..8785Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003439supercontigsc0003439:8690..9240 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.05824	2.50702	1.03881	0.33877	0	0	0	0	0	0	1.23936	0.203677	0	0	0	0.18636	0	0	0	0	0	0	0.350651	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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