transcript:BL90184_cuf0 (mRNA) - B. lanceolatum

Overview
Nametranscript:BL90184_cuf0
Unique Nametranscript:BL90184_cuf0
TypemRNA
OrganismBranchiostoma lanceolatum (Amphioxus)



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Sequence
The following sequences are available for this feature:

protein sequence of transcript:BL90184_cuf0

>transcript:BL90184_cuf0-protein ID=transcript:BL90184_cuf0-protein|Name=transcript:BL90184_cuf0|organism=Branchiostoma lanceolatum|type=polypeptide|length=104bp
MLENDLLDLDKIAATHLVNRVLGDDDTDAGQVLHHHRLHGLTGYVEAIEE
ARQIDDKVEDIRAQILQKENELAWALLQTVNDAENIAGITEQVEKLMAER
PKLV
Run BLAST on NCBI

mRNA from alignment at xfSc0020157:3..529+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>transcript:BL90184_cuf0 ID=transcript:BL90184_cuf0|Name=transcript:BL90184_cuf0|organism=Branchiostoma lanceolatum|type=mRNA|length=527bp|location=Sequence derived from alignment at xfSc0020157:3..529+ (Branchiostoma lanceolatum)
GGTAAAAATAATAGAAGCTTTCCTATTATATGAACATGAACACAAAATAA
TAATTCATGATGCTATCTTCCTACTGATCTTTCCATGCAAATTTTTAAGG
ACCAGTCATCATAATCCCTCTGATGAATTGCAAATCATAAAATTATATTT
CTCAAACAGGTGTGCATCCCTGGCCTCCACTTGAGCTTGGGGATATACCA
TAAGCTGTATGTCATGCTAGAGAACGACCTACTTGATCTTGACAAGATTG
CGGCAACTCACCTCGTCAATCGTGTTCTTGGAGATGACGACACCGATGCT
GGACAAGTCCTGCACCACCACAGACTTCACGGACTCACTGGTTACGTGGA
GGCTATAGAGGAAGCAAGGCAGATAGATGACAAGGTGGAAGACATCAGAG
CACAAATACTCCAGAAAGAGAATGAGTTGGCATGGGCCTTACTTCAAACC
GTAAATGACGCTGAAAACATCGCTGGAATAACGGAGCAAGTGGAGAAGCT
CATGGCAGAGAGGCCAAAACTGGTAAA

Coding sequence (CDS) from alignment at xfSc0020157:3..529+

>transcript:BL90184_cuf0 ID=transcript:BL90184_cuf0|Name=transcript:BL90184_cuf0|organism=Branchiostoma lanceolatum|type=CDS|length=312bp|location=Sequence derived from alignment at xfSc0020157:3..529+ (Branchiostoma lanceolatum)
ATGCTAGAGAACGACCTACTTGATCTTGACAAGATTGCGGCAACTCACCT
CGTCAATCGTGTTCTTGGAGATGACGACACCGATGCTGGACAAGTCCTGC
ACCACCACAGACTTCACGGACTCACTGGTTACGTGGAGGCTATAGAGGAA
GCAAGGCAGATAGATGACAAGGTGGAAGACATCAGAGCACAAATACTCCA
GAAAGAGAATGAGTTGGCATGGGCCTTACTTCAAACCGTAAATGACGCTG
AAAACATCGCTGGAATAACGGAGCAAGTGGAGAAGCTCATGGCAGAGAGG
CCAAAACTGGTA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
gene:BL90184gene:BL90184Branchiostoma lanceolatumgene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
BL90184_cuf0-E1BL90184_cuf0-E1-1564476830-545730Branchiostoma lanceolatumexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
transcript:BL90184_cuf0transcript:BL90184_cuf0-proteinBranchiostoma lanceolatumpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
xfSc0020157genomexfSc0020157:3..529 +
Properties
Property NameValue
Transcript idBL90184_cuf0
Biotypeprotein_coding