TCONS_00042251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042251
Unique NameTCONS_00042251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length325

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042251 ID=TCONS_00042251|Name=TCONS_00042251|organism=Clytia hemisphaerica|type=transcript|length=325bp
TACGACTTCATCGAAGTGAAGAACAACACATACTTGAAACTTTCAAGTAG
AGCATTTGTCGATTGTCCATTTTCTCCTGAAGATTATGGTGTAATTACAC
CGCGTAGTTACCACGATTTTGATCCGCACCGAACCACGTGTCATGGTGGT
TATCTTGCTTCAGCCATTGAACGTTGGTGTCCTACACTAGAAGACCAAGC
GAAATTGGCTCACAAAATATATATGTGCATGTTATTGTTTCAAGTGCCCC
ATAAAAGCAAGAGATTGGTTTTGGTCGGAGATATTGACAGTGGAAAGACA
TCAGTGATGAACATGTTTTTCGGTC
Run BLAST on NCBI

protein sequence of TCONS_00042251-protein

>TCONS_00042251-protein ID=TCONS_00042251-protein|Name=TCONS_00042251-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
YDFIEVKNNTYLKLSSRAFVDCPFSPEDYGVITPRSYHDFDPHRTTCHGG
YLASAIERWCPTLEDQAKLAHKIYMCMLLFQVPHKSKRLVLVGDIDSGKT
SVMNMFFG
Run BLAST on NCBI

transcript from alignment at sc0003309:3..327

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042251 ID=TCONS_00042251|Name=TCONS_00042251|organism=Clytia hemisphaerica|type=transcript|length=325bp|location=Sequence derived from alignment at sc0003309:3..327 (Clytia hemisphaerica)
GACCGAAAAACATGTTCATCACTGATGTCTTTCCACTGTCAATATCTCCG
ACCAAAACCAATCTCTTGCTTTTATGGGGCACTTGAAACAATAACATGCA
CATATATATTTTGTGAGCCAATTTCGCTTGGTCTTCTAGTGTAGGACACC
AACGTTCAATGGCTGAAGCAAGATAACCACCATGACACGTGGTTCGGTGC
GGATCAAAATCGTGGTAACTACGCGGTGTAATTACACCATAATCTTCAGG
AGAAAATGGACAATCGACAAATGCTCTACTTGAAAGTTTCAAGTATGTGT
TGTTCTTCACTTCGATGAAGTCGTA

Coding sequence (CDS) from alignment at sc0003309:3..327

>TCONS_00042251 ID=TCONS_00042251|Name=TCONS_00042251|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0003309:3..327 (Clytia hemisphaerica)
ACCGAAAAACATGTTCATCACTGATGTCTTTCCACTGTCAATATCTCCGA
CCAAAACCAATCTCTTGCTTTTATGGGGCACTTGAAACAATAACATGCAC
ATATATATTTTGTGAGCCAATTTCGCTTGGTCTTCTAGTGTAGGACACCA
ACGTTCAATGGCTGAAGCAAGATAACCACCATGACACGTGGTTCGGTGCG
GATCAAAATCGTGGTAACTACGCGGTGTAATTACACCATAATCTTCAGGA
GAAAATGGACAATCGACAAATGCTCTACTTGAAAGTTTCAAGTATGTGTT
GTTCTTCACTTCGATGAAGTCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026111XLOC_026111Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042251-exon-sc0003309-1491911889:3..327TCONS_00042251-exon-sc0003309-1491911889:3..327Clytia hemisphaericaexon
TCONS_00042251-exon-sc0003309-1510915933:3..327TCONS_00042251-exon-sc0003309-1510915933:3..327Clytia hemisphaericaexon
TCONS_00042251-exon-sc0003309-1575043694:3..327TCONS_00042251-exon-sc0003309-1575043694:3..327Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042251-proteinTCONS_00042251-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003309supercontigsc0003309:3..327 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.83494	2.08758	1.03881	0.67754	0	0	0.786369	0	0.515423	1.9153	1.5492	1.83309	2.03394	3.59085	0.52097	1.11816	0.688742	0.235313	0.325097	0.680382	0.295688	1.73071	2.10391	2.86914	0	0.586088	0.83869	0	0.33944	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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