TCONS_00042187 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042187
Unique NameTCONS_00042187
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042187 ID=TCONS_00042187|Name=TCONS_00042187|organism=Clytia hemisphaerica|type=transcript|length=447bp
CCCAAATGAAATCAGAATAGACAGTAGAGAAAAAGATCAAAAGCATGAAA
GAAGTGGCAAATACACAGGAAGCCCTAACCGTAACCAAGAAAGAGATAAA
TGACGTAGTAAGAAAGCTGAAAAGAAGAAAGGCACCTGATTCTGGAGGAT
GGAGGAATGAGATGTTGAAAGAGGGAGGTGGTGAGATGATCAAATcactg
aaaattatatttaacgaAATCTTCAGGAACATGATTATACCAGAGCAGTG
GGAAAAAGTAACCGTCAAGTCAATATATAAAAACAAGGGAAAGAAGACAG
AAATGAAGAACAGCAGTGGAATTTTTCTGACCAATACGGTCAGCAAAGTG
TTTGAGAAAGTACTACTTAACAAGGCAGagtcaaaattgaatataaacAA
ATTCCAGAATGGTGGACAAAAGGAGAGATCAACCAAGGACAACTGGC
Run BLAST on NCBI

protein sequence of TCONS_00042187-protein

>TCONS_00042187-protein ID=TCONS_00042187-protein|Name=TCONS_00042187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
QLSLVDLSFCPPFWNLFIFNFDSALLSSTFSNTLLTVLVRKIPLLFFISV
FFPLFLYIDLTVTFSHCSGIIMFLKISLNIIFSDLIISPPPSFNISFLHP
PESGAFLLFSFLTTSFISFLVTVRASCVFATSFMLLIFFSTVYSDFIW
Run BLAST on NCBI

transcript from alignment at sc0003266:1445..1891

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042187 ID=TCONS_00042187|Name=TCONS_00042187|organism=Clytia hemisphaerica|type=transcript|length=447bp|location=Sequence derived from alignment at sc0003266:1445..1891 (Clytia hemisphaerica)
GCCAGTTGTCCTTGGTTGATCTCTCCTTTTGTCCACCATTCTGGAATTTg
tttatattcaattttgactCTGCCTTGTTAAGTAGTACTTTCTCAAACAC
TTTGCTGACCGTATTGGTCAGAAAAATTCCACTGCTGTTCTTCATTTCTG
TCTTCTTTCCCTTGTTTTTATATATTGACTTGACGGTTACTTTTTCCCAC
TGCTCTGGTATAATCATGTTCCTGAAGATTtcgttaaatataattttcag
tgATTTGATCATCTCACCACCTCCCTCTTTCAACATCTCATTCCTCCATC
CTCCAGAATCAGGTGCCTTTCTTCTTTTCAGCTTTCTTACTACGTCATTT
ATCTCTTTCTTGGTTACGGTTAGGGCTTCCTGTGTATTTGCCACTTCTTT
CATGCTTTTGATCTTTTTCTCTACTGTCTATTCTGATTTCATTTGGG

Coding sequence (CDS) from alignment at sc0003266:1445..1891

>TCONS_00042187 ID=TCONS_00042187|Name=TCONS_00042187|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0003266:1445..1891 (Clytia hemisphaerica)
CAGTTGTCCTTGGTTGATCTCTCCTTTTGTCCACCATTCTGGAATTTgtt
tatattcaattttgactCTGCCTTGTTAAGTAGTACTTTCTCAAACACTT
TGCTGACCGTATTGGTCAGAAAAATTCCACTGCTGTTCTTCATTTCTGTC
TTCTTTCCCTTGTTTTTATATATTGACTTGACGGTTACTTTTTCCCACTG
CTCTGGTATAATCATGTTCCTGAAGATTtcgttaaatataattttcagtg
ATTTGATCATCTCACCACCTCCCTCTTTCAACATCTCATTCCTCCATCCT
CCAGAATCAGGTGCCTTTCTTCTTTTCAGCTTTCTTACTACGTCATTTAT
CTCTTTCTTGGTTACGGTTAGGGCTTCCTGTGTATTTGCCACTTCTTTCA
TGCTTTTGATCTTTTTCTCTACTGTCTATTCTGATTTCATTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026053XLOC_026053Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042187-proteinTCONS_00042187-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042187-exon-sc0003266-1491911889:1445..1891TCONS_00042187-exon-sc0003266-1491911889:1445..1891Clytia hemisphaericaexon
TCONS_00042187-exon-sc0003266-1510915933:1445..1891TCONS_00042187-exon-sc0003266-1510915933:1445..1891Clytia hemisphaericaexon
TCONS_00042187-exon-sc0003266-1575043694:1445..1891TCONS_00042187-exon-sc0003266-1575043694:1445..1891Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003266supercontigsc0003266:1445..1891 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.990604	0.571209	0.623729	0.553896	0.472035	1.00604	1.91648	1.29831	0	0.365487	0.324559	0.951491	0.861532	0.776254	0.61452	0.211666	0.559517	0.295117	0.742189	1.17719	0.834796	1.38984	0.800528	0.310775	0.369335	0.951391	1.01674	0.47724	0.496355	0.420138
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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