TCONS_00042172 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042172
Unique NameTCONS_00042172
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042172 ID=TCONS_00042172|Name=TCONS_00042172|organism=Clytia hemisphaerica|type=transcript|length=489bp
tCATAAATCTGAAACAACAAAACTCCCAAAACATTGCAAACACACCCAAA
CTTTCACCCGGAATTCCCTTGGTCTTTTGAATCAAAGGCTGCTCAAAAAT
GGCGTCAAAATACAAGTTGATACAATCAAAGTTAGACCTCTCAGCCTTGA
AGTTCATTCAGAGGGGAGTGGGTATGTGTACAATACAGCGGTATGTATCA
TTTTTTAGGGGATGTAGGGGTATGTTTGGCAGATTGCTGGATAATCATTG
TACTTACTATATAGGAGGGTGAGTGGATTGGTATCTAAACTTTCAAAATG
CTGTGTAGTATTATACGTACTCCCCCTGGTTCATTGAGAATCTGAAACCT
ATTACTTTATATGTCCTTTTTACTTTGTGATTTCCAGGGAAAAAGTTGGG
CGAAGTTATTAATGCAATTGCAGAGACctataaaaaatcataaactttGT
AAAATATGAACTTGTAAGAATTAACTCAAAAGACTAGGT
Run BLAST on NCBI

transcript from alignment at sc0003255:12245..12733

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042172 ID=TCONS_00042172|Name=TCONS_00042172|organism=Clytia hemisphaerica|type=transcript|length=489bp|location=Sequence derived from alignment at sc0003255:12245..12733 (Clytia hemisphaerica)
ACCTAGTCTTTTGAGTTAATTCTTACAAGTTCATATTTTACaaagtttat
gattttttatagGTCTCTGCAATTGCATTAATAACTTCGCCCAACTTTTT
CCCTGGAAATCACAAAGTAAAAAGGACATATAAAGTAATAGGTTTCAGAT
TCTCAATGAACCAGGGGGAGTACGTATAATACTACACAGCATTTTGAAAG
TTTAGATACCAATCCACTCACCCTCCTATATAGTAAGTACAATGATTATC
CAGCAATCTGCCAAACATACCCCTACATCCCCTAAAAAATGATACATACC
GCTGTATTGTACACATACCCACTCCCCTCTGAATGAACTTCAAGGCTGAG
AGGTCTAACTTTGATTGTATCAACTTGTATTTTGACGCCATTTTTGAGCA
GCCTTTGATTCAAAAGACCAAGGGAATTCCGGGTGAAAGTTTGGGTGTGT
TTGCAATGTTTTGGGAGTTTTGTTGTTTCAGATTTATGa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026041XLOC_026041Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042172-exon-sc0003255-1491911889:12245..12733TCONS_00042172-exon-sc0003255-1491911889:12245..12733Clytia hemisphaericaexon
TCONS_00042172-exon-sc0003255-1510915933:12245..12733TCONS_00042172-exon-sc0003255-1510915933:12245..12733Clytia hemisphaericaexon
TCONS_00042172-exon-sc0003255-1575043694:12245..12733TCONS_00042172-exon-sc0003255-1575043694:12245..12733Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003255supercontigsc0003255:12245..12733 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0558407	1.14347	1.90328	1.80968	1.6663	0.75395	1.31432	1.27054	0.548906	0.583838	0.603	0.821074	0.180414	0.87112	0	0.673458	0.964457	0.655386	0.827487	0	0.352099	0.657573	0.193214	0.603833	0.601417	0.877966	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042172 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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