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Sequence
The following sequences are available for this feature:
protein sequence of transcript:BL86856_cuf1 >transcript:BL86856_cuf1-protein ID=transcript:BL86856_cuf1-protein|Name=transcript:BL86856_cuf1|organism=Branchiostoma lanceolatum|type=polypeptide|length=257bp
MGKRPRRSRGSSGTDESSSSPKSYPPPKTVKMAADTGIEENLQSLSPELQ
TLAQLILKQTKEQQETLLSQFQDVGEKLSGQISTLDNKVEGLSADLTKLR
ERVGATENVAEFQAAEILDLRRALDEERRERLKADLLAERYSRKADIIIR
GLPYRNDENSEQLFAEFLAGKLHLDPVPVAAVHRLARPTKTRPNPPLLAR
LLNFHDRDRIIREGRKLRRNKEGLAVFEHLPPPLMAARASLVPDRNAAIE
KAKGKNN Run BLAST on NCBI mRNA from alignment at Sc0000560:1975..4645- Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >transcript:BL86856_cuf1 ID=transcript:BL86856_cuf1|Name=transcript:BL86856_cuf1|organism=Branchiostoma lanceolatum|type=mRNA|length=2671bp|location=Sequence derived from alignment at Sc0000560:1975..4645- (Branchiostoma lanceolatum)
GGAATTCAAGATGGCGGCCCTAGGCTAGGTGTGTGAAAGTGTGCTCCAAA
CAATTTTTACTTTCCACGCGTAACGGGCCTACACAGAGCTGAAATTATAC
CTGTCCGTTGTCAGCCGGAGACTGTATCGTGTTTTCTTTGATGGGTAAGA
GACCTAGACGCTCGAGGGGTTCCAGTGGAACGGATGAAAGCAGCTCATCT
CCAAAAAGCTACCCCCCACCCAAGACAGTAAAGATGGCGGCAGATACAGG
CATTGAGGAAAATCTACAGTCTTTGTCTCCGGAACTACAGACACTCGCGC
AGCTTATTCTGAAGCAGACTAAAGAACAGCAGGAGACTCTACTAAGTCAG
TTCCAGGACGTTGGGGAAAAACTGTCAGGCCAAATTAGCACTTTGGACAA
TAAAGTCGAAGGTTTGTCTGCGGACTTAACCAAGTTACGAGAGCGAGTGG
GAGCTACGGAGAATGTCGCGGAGTTCCAAGCAGCGGAAATTCTGGATTTA
CGCAGAGCTTTGGACGAGGAACGCCGTGAAAGACTGAAAGCAGACTTATT
GGCTGAGCGCTACTCTAGGAAAGCAGATATAATCATACGGGGACTGCCAT
ATAGAAATGACGAGAACTCGGAGCAGTTATTTGCGGAATTTTTGGCGGGA
AAGCTACACCTGGACCCGGTACCAGTTGCAGCAGTTCACCGGCTTGCAAG
GCCAACGAAAACAAGACCCAACCCACCCCTGCTTGCCAGACTTCTGAACT
TTCATGACCGAGATCGGATTATACGGGAGGGGAGAAAGCTACGACGGAAC
AAGGAGGGCCTAGCCGTGTTTGAACATCTTCCCCCGCCACTGATGGCTGC
GAGAGCTAGCTTGGTTCCGGATCGGAATGCTGCAATAGAAAAAGCCAAAG
GTACGGATGTTAAAGTTTCGATATGGGTGCCCCCTAAGGCTACTTATGCG
ATCCTACTTGTGAATGGGCAGGAAAAGAAACGTGTTGATGCTGTAGACAT
CATGTTGTCTCCTAAGAAGGGATCGCTGCCGAACACTTAAGGGCTAACCC
GTTGTTTACAAGTGACTGAAGAGATTAAACACGCACTTTTTCCTCATTGA
GGCTCAGGTGTTTTTTATTGCTGTGTAAACAATGAATCGGATGTGTCAGG
TCAGAATGGTTGATTTACCTTACTGCATGGTGTGGATCACAGGTAGTAAC
AAATATGCGGCGGTTTTGAATAATTGGAATTTGTACATACACTTGCAGGT
AAAAACAATTAGGGGAACACCTGCTGCCCCTTGGCTCATGGAAACATCAA
CCTTTGATTGACCGCAAGCCGAGCCAGGCATTTTTGTTGCTATCTGTATG
CAGAAATCATTTTTGTTCCTTATTTGCCAAAATCTACACTTTCAAGAGTG
ATTAGGTTATGTTGTCTTTATCTCTACACTCGACCATTATATTTATTTTG
AGTGATGTACGATGATCATATTGTGTTTCAAATTTATTTTCTTTATGCTG
TCATGTTCTGATAGATTTTTTTCTGTTTTGATTTATGCCTGGTTTGTTAT
TGTTATGAATCTATGTTTTCTACCTCCCCATGGGTAGAAAAATTCTGACC
AGGAAATTGATTTGAATTAATCTTTCTGTTTACCTTGGTTTATATTTATA
CAGTTTATTTTCCTATTGTAAAAGTGGAATATAATTTATTTGTACCACAT
GGAGCTAGTTAGAGAGACCACCAACCATATAGAGTTTAATGTTTTGGAAT
TTTGGTGGTGTTTATGTTGTTTTCTTAGTTATGTGGAACCATCCAACAAT
AATTTCCTCCAGTTCTATGATCTTCATTTCAACCTTAAGTGCATATAATT
ATACTTATGTTCTGATTTGTACATCCTTAGTTTTGTCATATATTATGTCT
ACCAATTATGTTAACCGTTTTTCAGTTCTGTTTGTTATAGATATCATTTT
ACTATGCCCCTTTGCCCAGCATGACATCCAATTTTTTAGGACACTCCCAA
CCAACCATGACTCAAGTAGAAATTCAGATTTGTAGTTACAACTGTAATGG
ACTTAGAGATTCTGTTAAACGTAGGGGGGTATTCACCTGGTTAAAAGACA
AACCATACCACATAATATGCCTTCAGGAGACACATTCTACATTGTTAGAG
GAAAATAGATGGCAAAATGAGTGGGGGGGATCCATGTTTTTCTCACACGG
TACCCCCAGTCAAAGAGGTACAGCCATCCTTTTTAGAGACAATATCAATT
TTTGTATTAACCAGACTAAAAATGACTGTTTGGGCAGATGGATTATTGTT
GATGTAACAATTGATGATTATAGATTTTGTCTAGTTAGTATATATGCACC
TAATGAGGACTCCCCTGAATTTTTTAATAATTTATCTGAGGAATTAGACA
CTTTTTCTGATTGTAATGAAAACCTAATTATTACAGGTGACTTTAACACT
GTACAAAATCTACAACTAGACNACTCCCCTGAATTTTTTAATAATTTATC
TGAGGAATTAGACACTTTTTCTGATTGTAATGAAAACCTAATTATTACAG
GTGACTTTAACACTGTACAAAATCCACAACTAGACAGACTTGCAACAAAC
AGAACATATCATCCGAAAGCCCATAGTGCAATCTCAGAATTAAAAGGTAA
ATTTGATTTATACGATTTATG Coding sequence (CDS) from alignment at Sc0000560:1975..4645- >transcript:BL86856_cuf1 ID=transcript:BL86856_cuf1|Name=transcript:BL86856_cuf1|organism=Branchiostoma lanceolatum|type=CDS|length=1548bp|location=Sequence derived from alignment at Sc0000560:1975..4645- (Branchiostoma lanceolatum)
ATGGGTAAGAGACCTAGACGCTCGAGGGGTTCCAGTGGAACGGATGAAAG
CAGCTCATCTCCAAAAAGCTACCCCCCACCCAAGACAGTAAAGATGGCGG
CAGATACAGGCATTGAGGAAAATCTACAGTCTTTGTCTCCGGAACTACAG
ACACTCGCGCAGCTTATTCTGAAGCAGACTAAAGAACAGCAGGAGACTCT
ACTAAGTCAGTTCCAGGACGTTGGGGAAAAACTGTCAGGCCAAATTAGCA
CTTTGGACAATAAAGTCGAAGGTTTGTCTGCGGACTTAACCAAGTTACGA
GAGCGAGTGGGAGCTACGGAGAATGTCGCGGAGTTCCAAGCAGCGGAAAT
TCTGGATTTACGCAGAGCTTTGGACGAGGAACGCCGTGAAAGACTGAAAG
CAGACTTATTGGCTGAGCGCTACTCTAGGAAAGCAGATATAATCATACGG
GGACTGCCATATAGAAATGACGAGAACTCGGAGCAGTTATTTGCGGAATT
TTTGGCGGGAAAGCTACACCTGGACCCGGTACCAGTTGCAGCAGTTCACC
GGCTTGCAAGGCCAACGAAAACAAGACCCAACCCACCCCTGCTTGCCAGA
CTTCTGAACTTTCATGACCGAGATCGGATTATACGGGAGGGGAGAAAGCT
ACGACGGAACAAGGAGGGCCTAGCCGTGTTTGAACATCTTCCCCCGCCAC
TGATGGCTGCGAGAGCTAGCTTGGTTCCGGATCGGAATGCTGCAATAGAA
AAAGCCAAAGGTAAAAACAATTAGATGGGTAAGAGACCTAGACGCTCGAG
GGGTTCCAGTGGAACGGATGAAAGCAGCTCATCTCCAAAAAGCTACCCCC
CACCCAAGACAGTAAAGATGGCGGCAGATACAGGCATTGAGGAAAATCTA
CAGTCTTTGTCTCCGGAACTACAGACACTCGCGCAGCTTATTCTGAAGCA
GACTAAAGAACAGCAGGAGACTCTACTAAGTCAGTTCCAGGACGTTGGGG
AAAAACTGTCAGGCCAAATTAGCACTTTGGACAATAAAGTCGAAGGTTTG
TCTGCGGACTTAACCAAGTTACGAGAGCGAGTGGGAGCTACGGAGAATGT
CGCGGAGTTCCAAGCAGCGGAAATTCTGGATTTACGCAGAGCTTTGGACG
AGGAACGCCGTGAAAGACTGAAAGCAGACTTATTGGCTGAGCGCTACTCT
AGGAAAGCAGATATAATCATACGGGGACTGCCATATAGAAATGACGAGAA
CTCGGAGCAGTTATTTGCGGAATTTTTGGCGGGAAAGCTACACCTGGACC
CGGTACCAGTTGCAGCAGTTCACCGGCTTGCAAGGCCAACGAAAACAAGA
CCCAACCCACCCCTGCTTGCCAGACTTCTGAACTTTCATGACCGAGATCG
GATTATACGGGAGGGGAGAAAGCTACGACGGAACAAGGAGGGCCTAGCCG
TGTTTGAACATCTTCCCCCGCCACTGATGGCTGCGAGAGCTAGCTTGGTT
CCGGATCGGAATGCTGCAATAGAAAAAGCCAAAGGTAAAAACAATTAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| Sc0000560 | genome | Sc0000560:1975..4645 - |
Properties
| Property Name | Value |
|---|
| Transcript id | BL86856_cuf1 |
| Biotype | protein_coding |
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