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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041944 ID=TCONS_00041944|Name=TCONS_00041944|organism=Clytia hemisphaerica|type=transcript|length=1366bp
aataaaattttgattagtGCGCTATGAAAAGTGTTGGTTGAATGCACGAT
AGAAAGTGCAATGTAAGAAAATGAAACGTCTCTGAAAGGTCTGACTACAT
TAGCTAAATCCAAGTTTGTTTCTTTTATCTAACGCTTGCGTTTCGTTCCA
GAGAAAATGAAAAGGGAGAAGTAAATAAATGATTAAAACAGAAGAGCATT
AGAGAAACTGGACAAAttacgaaaatatcaaattttcatcgaagcATCGA
TCGATAGAGTCATCAAACACATGTTATATGGTCGTTATTTTCCGCGGTTA
CGATAGATAGCGTTGAATCTAAAAGCAGAAAATTATCACACCCAGCAGGT
ACTGAACAATCTCAGATACTTCAGAGACGGGAGAAGATTATCAATAACGC
TATGGTTGCCTCTAAGATTTGTTGACAAAATGATAAGAAAACGTAcgata
cacccctgtttcagtaACCTGATCAAGGATCCGTCCCGATAAAAACCGGC
ACGTACAAATTGACACGTACATACGTTCACTGCCAAGCCACTTTAAGAAT
TTTGACCTCATTGAATTCATCGAaagtttgaatttcaaaggcTCCAGCGG
CCTTGGTTCTGCTTTAAGTGCCTGCAAATTGCCTACCGATCGACGCAGAA
TTTgaggaagattctaaaaatgcaaaaacgaAGCATACAAAAAAGTATTT
CCTTTAAAGGTTATGGCCCTTTAGAGTACTGTCGGTATTTTGACACCTAT
ACTACAACTAGGTCAACccagtcaaaattgaaaaaaatatattagtgAAT
TCtaggaaaaaagtgaattttcccgTACTCCGGCAATTACAAATACAGAC
TCGGTGTGTGAAGTTTTACTTGTTTCATAACTTCGCGATggtcgatttca
aattttcactgagttactgagacaggggtatattaTGGTGGCACTTAAAG
AATTCAGAACCAGCGTTGACTCGCCATGAACACAAAGACAGTAGACAGTA
TTAATTCTATATGGTAGTTCAATGCTCAGATGCATTAGTATACTCGTAGT
TGGCAGCAAACTTTTTAAGctcttatttggaaaatatgtactttttaatt
cttcttttagcgaaagaaaatactttataacATTGTCTCTCTCAGTGCCC
GGTGAGAACTTTTATAccctttggaaaaatgaaagataaaatAACGGTAA
GTAAGgaatatagaaaataaaaatttctcggGTTCTTAAATATCTGGTCT
GGGGCATATTTTCTCACCGGGCCGATTATTTATTGCCAATTGTTCCACTA
GGAAGGGGCTCCACCGTGTCATACTTTCTTGCCCCTTTTTCCACTTTCCG
TTTGCAGAAATATTTG Run BLAST on NCBI transcript from alignment at sc0003110:10965..12784+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041944 ID=TCONS_00041944|Name=TCONS_00041944|organism=Clytia hemisphaerica|type=transcript|length=1820bp|location=Sequence derived from alignment at sc0003110:10965..12784+ (Clytia hemisphaerica)
aataaaattttgattagtGCGCTATGAAAAGTGTTGGTTGAATGCACGAT
AGAAAGTGCAATGTAAGAAAATGAAACGTCTCTGAAAGGTCTGACTACAT
TAGCTAAATCCAAGTTTGTTTCTTTTATCTAACGCTTGCGTTTCGTTCCA
GAGAAAATGAAAAGGGAGAAGTAAATAAATGATTAAAACAGAAGAGCATT
AGAGAAACTGGACAAAttacgaaaatatcaaattttcatcgaagcATCGA
TCGATAGAGTCATCAAACACATGTTATATGGTCGTTATTTTCCGCGGTTA
CGATAGATAGCGTTGAATCTAAAAGCAGAAAATTATCACACCCAGCAGGT
GCGTATTTCTTTCATACCCCAGAAGAGTCTAGCACACCCACACCCACACC
CGTGTTTCACAGGCCATGTTAGGTTAATAGAAAATGCGCTCGGAAAAACC
CAGTGTTCATATCCCGTTGTTTATGCACATTTTAAATGAACACTATTTTG
ACGTTTAGCGTCCAttgaatacccctgtctcaagtaTCATTCCACCACTA
CAAATGCCCCGTGAAAAGCTAACTTTTTCTACTTTCGCAGTGATACTGGG
TGTGATAGCTGAGCCGATAAAAAGAATAGAGAAATTAATCCGATCATNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGAAATTAATCCGATCatcgtatatttttgttttctccttaTTTC
AGGTACTGAACAATCTCAGATACTTCAGAGACGGGAGAAGATTATCAATA
ACGCTATGGTTGCCTCTAAGATTTGTTGACAAAATGATAAGAAAACGTAc
gatacacccctgtttcagtaACCTGATCAAGGATCCGTCCCGATAAAAAC
CGGCACGTACAAATTGACACGTACATACGTTCACTGCCAAGCCACTTTAA
GAATTTTGACCTCATTGAATTCATCGAaagtttgaatttcaaaggcTCCA
GCGGCCTTGGTTCTGCTTTAAGTGCCTGCAAATTGCCTACCGATCGACGC
AGAATTTgaggaagattctaaaaatgcaaaaacgaAGCATACAAAAAAGT
ATTTCCTTTAAAGGTTATGGCCCTTTAGAGTACTGTCGGTATTTTGACAC
CTATACTACAACTAGGTCAACccagtcaaaattgaaaaaaatatattagt
gAATTCtaggaaaaaagtgaattttcccgTACTCCGGCAATTACAAATAC
AGACTCGGTGTGTGAAGTTTTACTTGTTTCATAACTTCGCGATggtcgat
ttcaaattttcactgagttactgagacaggggtatattaTGGTGGCACTT
AAAGAATTCAGAACCAGCGTTGACTCGCCATGAACACAAAGACAGTAGAC
AGTATTAATTCTATATGGTAGTTCAATGCTCAGATGCATTAGTATACTCG
TAGTTGGCAGCAAACTTTTTAAGctcttatttggaaaatatgtacttttt
aattcttcttttagcgaaagaaaatactttataacATTGTCTCTCTCAGT
GCCCGGTGAGAACTTTTATAccctttggaaaaatgaaagataaaatAACG
GTAAGTAAGgaatatagaaaataaaaatttctcggGTTCTTAAATATCTG
GTCTGGGGCATATTTTCTCACCGGGCCGATTATTTATTGCCAATTGTTCC
ACTAGGAAGGGGCTCCACCGTGTCATACTTTCTTGCCCCTTTTTCCACTT
TCCGTTTGCAGAAATATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041944-exon-sc0003110-1491911889:10965..11312 | TCONS_00041944-exon-sc0003110-1491911889:10965..11312 | Clytia hemisphaerica | exon |
| TCONS_00041944-exon-sc0003110-1510915933:10965..11312 | TCONS_00041944-exon-sc0003110-1510915933:10965..11312 | Clytia hemisphaerica | exon |
| TCONS_00041944-exon-sc0003110-1575043694:10965..11312 | TCONS_00041944-exon-sc0003110-1575043694:10965..11312 | Clytia hemisphaerica | exon |
| TCONS_00041944-exon-sc0003110-1491911889:11767..12784 | TCONS_00041944-exon-sc0003110-1491911889:11767..12784 | Clytia hemisphaerica | exon |
| TCONS_00041944-exon-sc0003110-1510915933:11767..12784 | TCONS_00041944-exon-sc0003110-1510915933:11767..12784 | Clytia hemisphaerica | exon |
| TCONS_00041944-exon-sc0003110-1575043694:11767..12784 | TCONS_00041944-exon-sc0003110-1575043694:11767..12784 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003110 | supercontig | sc0003110:10965..12784 + |
Blast
The following BLAST results are available for this feature:
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